<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20551

Description mediator of RNA polymerase II transcription subunit 13-like
SequenceMSSSFVPNGASLEDCHCNLFCLADLTGIKWKRYVWQGPTSAPILFPVTEEDPILSSFSRCLKADVLGVWRRDQRPGRRELWIFWWGEDPNFADLIHHDLSEEEDGVWENGLSYECRTLLFKAVHNLLERCLMNRNFVRIGKWFVKPYEKDEKPINKSEHLSCSFTFFLHGDSNVCTSVEINQHQPVYLLSEEHITLAQQSNSPFQVILSPFGLNGTLTGQAFKMSDSATKKLIGEWKQFYPISSCLKEMSEEKQEDMDWEDDSLAAVEVLVAGVRMIYPACFVLVPQSDIPTPSSVGSSHCSASCLGVHQVPASTRDPAMSSVTLTPPTSPEEVQTVDPQSAQKWVKFSSVSDGFNSDSTSHHGGKIPRKLANHVVDRVWQECNMNRAQNKRKYSASSGGLSEEEIPDKVASWDFVEATQRTNCSCLRHKNLKPRNPGQQGQAPSLSQQQQVLPKHKTNEKQEKSEKPQKRPLTPFHHRISVSDDVGMDTDSASQRLVISAPDSQVRFSNIRTNDVAKTPQMHGTEMANSPQPPPLSPHPCDVVDEGVTKTPSTPQSQHFYQMPTPDPLVPSKPMEDRIDGLSQSFPAQFQEAVEPTMYVGTAVNLEEDEANIAWKYYKVPKKKDVEFLPPQLPSDKFKDDPVGPFGQESVTSVTELMVQCKKPLKVSDELVQQYQIKNQYLSAIASDAEQESKIDPYAFVEGDEEFLFPDKKDRQNSEREAVKKHKVEDGPSSVTVLSHEEDAMSLFSPSIKQDAPRPTSHARPPSTSLIYDSDLAVSYTDLDNLFNSDEDELTDFSYVYKPENCQVLVGCSMFAPLKSLPSQCLPPIKLPEECIYRQSWTVGKLELLPSGPAVPFIKEGDGSTIDQEYGPAYTPQTHTSFGMPPSSAPPSNSGAGILPSPSTPRFPTPRTPRTPRTPRAGGPASAQGSVKYENSDLYSPASTPSTCRPLNSVEPATVPSIPEAHSLYVNLILSESVMNLFKDCNFDSCCICVCNMNIKGADVGVYIPDPMQEAQYRCTCGFSAVMNRKFGNNSGLFLEDELDIIGRNTECGKEAEKRFEALRATSAEHVNGGLKESEKFPDELILLLQDQCTNLFSPFGAADQDPFPRIGVISNWVRVEERDCCNDCYLALEHGRQFMDNMSGGKVDEALVKSSCLHPWSKRNVIIPGSKKSANGTDDKSSSKESKTGNLDPLSCISTADLHKMYPTPPSLEQHIMGFSPMNMSNKEYGSMDITPGGTVLEGNSSSIGTQFKIEVDEGFCSPKPSEIKRGFFLCACAVSPYSLSRCQPHWSRRLGFWSLGRLKAQLGLANRDFSRSTVIMAECTSLQFVSPFAFEAMQKVDVVRLASLSDPELRLLLPCLVRMALCAPADQSQSWAQDKKLILRLLSGVEAVNSIVALLSVDFHALEQDASKEQQLRHKLGGGSGESILVSQLQHGLTLEFEHSDSPRRLRLVLSELLAIMNKVSESSGEFFFKSSELFESPVYLEEAADVLCILQAGIVMTAK
Length1506
PositionMiddle
OrganismLeptonychotes weddellii (Weddell seal) (Otaria weddellii)
KingdomMetazoa
Lineage
Aromaticity0.08
Grand average of hydropathy-0.432
Instability index55.45
Isoelectric point5.32
Molecular weight167027.80
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20551
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     167.55|      36|      37|     875|     910|       1
---------------------------------------------------------------------------
  504-  552 (46.98/20.68)	SQVRFSNIrtndvakTPQ.MHgtemaNSPQPPPLSPHPCDvVDE.....GVTKT..P
  875-  902 (46.62/20.46)	...............TPQ.TH.....TSFGMPPSSAPPSN.SGA.....GILPS..P
  903-  941 (48.70/21.75)	STPRFPTP..........rTP.....RTPRTPRAGGPASA.QGSvkyenSDLYS..P
  943-  960 (25.25/ 7.18)	STP..............................STCRPLN.S........VEPAtvP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     105.71|      29|      37|      21|      57|       2
---------------------------------------------------------------------------
   21-   52 (48.56/44.55)	CL.ADLTGIkWKRYVWQGPTSAPILFpvTEEDP
   60-   89 (57.15/29.23)	CLkADVLGV.WRRDQRPGRRELWIFW..WGEDP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     120.36|      32|     634|     383|     438|       4
---------------------------------------------------------------------------
  342-  375 (34.87/10.46)	.....AQKWVKFSSVSDGFNSDstshhggKIPRKLA..NHV
  383-  416 (52.36/87.70)	CNMNRAQNKRKYSASSGGLSEE.......EIPDKVAswDFV
 1021- 1043 (33.13/11.80)	CGFSAVMN.RKFGNNSGLFLED.......EL..........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.58|      31|     286|     444|     484|       6
---------------------------------------------------------------------------
  176-  211 (45.27/20.64)	TSveINQHQPVYllsEEHITLAQQ..SNSPFQVILSPF
  444-  476 (51.31/46.82)	PS..LSQQQQVL...PKHKTNEKQekSEKPQKRPLTPF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.92|      33|      65|     746|     783|      10
---------------------------------------------------------------------------
  745-  782 (45.08/36.13)	M.............................SLFSPsIKqDAPrptSHARPP...STSLIYDSDLAVSYTD
  783-  847 (42.84/19.61)	LdnlfnsdedeltdfsyvykpencqvlvgcSMFAP.LK.SLP...SQCLPPiklPEECIYRQSWTVGKLE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.59|      31|     634|     601|     636|      11
---------------------------------------------------------------------------
  601-  636 (37.74/39.79)	GTAVnLEEDEANIAWKyYKVpkKKDVEFLPPQlPSD
 1238- 1268 (55.85/32.51)	GGTV.LEGNSSSIGTQ.FKI..EVDEGFCSPK.PSE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20551 with Med13 domain of Kingdom Metazoa
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