<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20452

Description Uncharacterized protein
SequenceMDSSNRIPNQGDSSSTEQAVDWRTKLPPEYRRKLVNKIIATFGKHLPSTRQESLNELKGIAMRFEQKCYTTATSHSDYMRKISLKLMKKNTSANPVPNPLPCNVAVNSSDPGSQGMQQVNNQGQAPPIPVPSNHPQATNQSIHSNVASPGVQGSAGVSPGTGISQSTMPNIPGQNSSLQNIQNISGIPQNGVGNSMGNGVSPNKFVSQRQIPGRQQPAPQQQQQSQNLQHYQPQLQQIVKQQPQQNNSTTSMQSHIQKQHQNMLHSGDFQPSQQSVLQPSMLQPASLSTGRQNQSAQPVIRNHQQPVLRQQRQQQQQAQSSPMGDQTSSTNLHLSKLIGQSGGFSEMQQQQHPRLMGQQKNISSSQQHSIGQHNNFSAIHQQHFGSQSSFPGQQRQQNQLHGNPTMLNNQQSSLLLQSKVAVPQQNQTAQGQRSQLELQQQAVTQTQSGQLPHQLTMNPQPNMLQRDMQQRLSASGLFQQKNVIDQQKLLQQQRAMPEASSTSSDSTAQTGNPNTGDRQEEVYQKIQIMKDKYMPAIKDLYQKFTGKLLNYDSLSRKPTAEQVEKMKVIVKQLEACMGFMQIPKNRISPDHIEKIGAIERNILQLINTYKHILQQPNMNSLQQSNLREKVHLTQMQPHQNQINSQIQPVNLQHNNMVSLQHNAVSPLPLVSSAQQNMTGMLQPNTNMIPHQQLKQPQSRQMPQQMLHKHQPLHHQQKFHQQNGRLQVNQLPQLNHINDGNDLKIRHQTRVMSETLQQQIRAPFSPQIDQQNVLTSVTKSSTPSQSVNSSFIVSSPSTISTSHMVGDSGKADSGAPPRCIAGNIGNQSILTIATPGISASPLLSEFTSPDGNHGNGASIVAEKPTTVEDPMERLLKVVNSISTKSLSASISDIDTAISMMDSIAGTAPSNVSRVEVDEDLVSMAIDHLQESAVVTQDGSAINMMDSIAVDEDLVAIIKDYLQESAFVTQDGTTGTRKMKRWSANESFMHLNCLEASELECTATHTIKRPRIERNHALLEEIKIINQGLIDTVVDISESNADPPAVSELGEGTVVKCSYCPVALGPHLKSHRSTSKYYIRQLVLLWMIIRLKRHVKRPAYLLDPSVDMNFFLTDVQSPIQPLQLFVPPNYPNCSPVLLDKVPVEVGQSPGLGWLKLSIDRIRPEFPIVSKEYEDLSIKAKWRFSSSLRKLSEPMSLKDMAKTWDVCARAVVAEYAQQTAGGGTFTSKYGAWEDCLTAS
Length1236
PositionTail
OrganismArtemisia annua (Sweet wormwood)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Asteroideae> Anthemideae> Artemisiinae> Artemisia.
Aromaticity0.04
Grand average of hydropathy-0.653
Instability index64.98
Isoelectric point9.18
Molecular weight137032.98
Publications
PubMed=29703587

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20452
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     114.57|      25|      30|     913|     937|       1
---------------------------------------------------------------------------
  891-  912 (28.24/16.27)	.DIDTA.ISM.MDSIAGTAPSNVSR
  913-  937 (43.94/29.52)	VEVDEDLVSMAIDHLQESAVVTQDG
  946-  970 (42.38/28.21)	IAVDEDLVAIIKDYLQESAFVTQDG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     426.30|      54|      92|     252|     305|       3
---------------------------------------------------------------------------
  113-  178 (42.27/ 9.91)	SQGMQQVNNQGQappipVPSN...HPQA....TNQSihsnVASP..GVQ..GSAGVSPGTGiSQSTM....P.NIpgQNSSL
  252-  305 (99.50/32.95)	MQSHIQKQHQNM.....LHSG...DFQP....SQQS....VLQP..SML..QPASLSTGRQ.NQSAQ....P.VI..RNHQQ
  310-  360 (56.29/15.55)	QQRQQQQQAQSS......PMG...D.QT....SSTN.....LHL..SKLigQSGGFSEMQQ.QQ..H....P.RL..MGQQK
  365-  411 (50.30/13.14)	SQQHSIGQHNNF...saIHQQ...HF.G....SQSS....F..P..............GQQ.RQQNQlhgnP.TM..LNNQQ
  416-  460 (35.53/ 7.20)	LQSKVAVPQQNQ.....TAQGqrsQLEL....QQQA....VT..................Q.TQSGQ...lPhQL..TMNPQ
  464-  520 (46.91/11.78)	LQRDMQ...QRL.....SASG...LFQQknviDQQK....LLQQqrAMP..EASSTSSDST.AQTGN....P.NT..GDRQE
  677-  710 (48.37/12.37)	MTGMLQ.PNTNM.....I.........P....HQQ............LK..QPQS.......RQMPQ....Q.ML..HKH.Q
  711-  748 (47.11/11.86)	PLHHQQKFHQ.......................QNG....RLQV..NQL...P...QLNHI.NDGND....L.KI..R.HQT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.75|      21|      28|     821|     841|       4
---------------------------------------------------------------------------
  821-  841 (36.20/19.51)	GNIGNQSILTIATPGISASPL
  850-  870 (31.55/16.05)	GNHGNGASIVAEKPTTVEDPM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.22|      14|      27|     752|     765|       5
---------------------------------------------------------------------------
  752-  765 (25.95/13.95)	SETLQQQIRAPF...SP
  779-  795 (20.27/ 9.10)	SSTPSQSVNSSFivsSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.81|      11|      37|     613|     623|       6
---------------------------------------------------------------------------
  613-  623 (22.33/ 9.92)	LQQPNMNSLQQ
  651-  661 (19.47/ 7.61)	LQHNNMVSLQH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      29.25|      10|      32|     558|     569|      10
---------------------------------------------------------------------------
  558-  569 (12.03/13.62)	PtaEQVEKMKVI
  589-  598 (17.22/10.47)	P..DHIEKIGAI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20452 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MRKISLKLMKKNTSANPVPNPLPCNVAVNSSDPGSQGMQQVNNQGQAPPIPVPSNHPQATNQSIHSNVASPGVQGSAGVSPGTGISQSTMPNIPGQNSSLQNIQNISGIPQNGVGNSMGNGVSPNKFVSQRQIPGRQQPAPQQQQQSQNLQHYQPQLQQIVKQQPQQNNSTTSMQSHIQKQHQNMLHSGDFQPSQQSVLQPSMLQPASLSTGRQNQSAQPVIRNHQQPVLRQQRQQQQQAQSSPMGDQTSSTNLHLSKLIGQSGGFSEMQQQQHPRLMGQQKNISSSQQHSIGQHNNFSAIHQQHFGSQSSFPGQQRQQNQLHGNPTMLNNQQSSLLLQSKVAVPQQNQTAQGQRSQLELQQQAVTQTQSGQLPHQLTMNPQPNMLQRDMQQRL
2) PNMNSLQQSNLREKVHLTQMQPHQNQINSQIQPVNLQHNNMVS
3) QHNAVSPLPLVSSAQQNMTGMLQPNTNMIPHQQLKQPQSRQMPQQMLHKHQPLHHQQKFHQQNGRLQVNQLPQLNHINDGNDLKIRHQTRVMSETLQQQIRAPFSPQIDQQNVLTSVTKSS
4) QKLLQQQRAMPEASSTSSDSTAQTGNPNTGDRQEEVYQK
79
616
660
487
472
658
780
525










Molecular Recognition Features






MoRF SequenceStartStop




NANANA