<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20449

Description Uncharacterized protein
SequenceMMNSGSGNVDQVAVGVVDELEDIDFESWINELKSDDLDFVVMSRVCMMNSGSGNVDQVAVGVVDELEDIDFESWINELTSDDLDFVVMSSEDMTTSNSDYSSQPITSTINGGTSLISGSANQIQGGMNQEMSTMSSLTPSNSTATLQISDPVLYAAPSLVSNHLAQRCQSARTTDYSQYHSVQPTQANQNLLLKEQQVHSQAHQAHQYNNTQLHSQADQSNIIFGQKNNHPNHQMIWDQLHTYTRPTVDSRMENVRNQQALRQLQNVNWNPNNNHLQVQQNAWTAHDLITGGVKHGIDLPTNLTASVGFATPAQFPSSDAWREYAFRQATNLQASNEYQKVKTYLARMIVFLSISNIDFIPKHNESVYNSMTLIVNYVLYFRSKNSGTSHKHGQFNWSPVPSEQVSGLESNMVVRKSRSYSRKPVAHYGRMPSLDVDVSSRRGVQHKSENPLQINGFLKAPSSSVLSTTQQINLEKLKQPMQKTNERRKRIGPHGMSPLGSGLLDQCPSPQLSLPSTVNQISRKTASPQWSPLSIPSTVNHVLTQESIACSSSILGNSSTVNHVLTPESIARSSFILGNSSTPSPHNKQSSSSISALFNVDSQEHKTPIDHPGTGKDQEPKSLEDVHHHLIEVVESKSSESMVSSFDDIHSVVKAMDSISDYELDDLLNDLGPYEDNELNFMQEINNESTQTMKCDHDQIFSCDWDIPHTQTSTNKRRKIENNYGTIVDEIKEINSKLVETFLDVVSDTFIDTLSITGVSSGTIVKCSYKNVCPPEINGTPAGVVYCDKRPEFFIQLLVPAEYPASSPRLFKSGFNVLSEPLKKPYEEMLSKFDLSLHELPKKNSLGDMARKWDSCVRGVLLEFVNKSIGKGLTSRNWENSSSGSN
Length886
PositionTail
OrganismArtemisia annua (Sweet wormwood)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Asteroideae> Anthemideae> Artemisiinae> Artemisia.
Aromaticity0.07
Grand average of hydropathy-0.532
Instability index47.14
Isoelectric point5.50
Molecular weight98474.42
Publications
PubMed=29703587

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20449
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     183.15|      43|      43|       1|      43|       1
---------------------------------------------------------------------------
    1-   43 (91.54/59.96)	MMNSGSGNVDQVAVGVVDELEDIDFESWINELKSDDLDFVVMS
   47-   89 (91.61/60.01)	MMNSGSGNVDQVAVGVVDELEDIDFESWINELTSDDLDFVVMS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.16|      19|      19|     540|     558|       2
---------------------------------------------------------------------------
  540-  558 (38.08/25.75)	NHVLTQESIACSSSILGNS
  562-  580 (38.08/25.75)	NHVLTPESIARSSFILGNS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.05|      18|      19|     815|     833|       3
---------------------------------------------------------------------------
  815-  833 (27.63/22.72)	FNvLSE.PLKKPYEEMLSKF
  835-  853 (28.43/18.10)	LS.LHElPKKNSLGDMARKW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.16|      10|      20|     509|     518|       4
---------------------------------------------------------------------------
  509-  518 (20.61/13.35)	SPQ...LSLPSTV
  527-  539 (15.55/ 7.98)	SPQwspLSIPSTV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.74|      12|      17|     178|     189|       5
---------------------------------------------------------------------------
  178-  189 (23.42/13.69)	QYHSVQ.PTQANQ
  207-  219 (17.32/ 8.16)	QYNNTQlHSQADQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.72|      16|      17|     421|     437|       6
---------------------------------------------------------------------------
  421-  437 (25.82/24.14)	SRKPVAHYGRMPsLDVD
  440-  455 (28.90/21.10)	SRRGVQHKSENP.LQIN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.74|      16|      20|     622|     638|       8
---------------------------------------------------------------------------
  622-  638 (21.66/19.42)	SLEDVhHHLIEVVESKS
  645-  660 (27.09/18.06)	SFDDI.HSVVKAMDSIS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.17|      16|      16|      95|     110|       9
---------------------------------------------------------------------------
   95-  110 (28.39/17.50)	TSNSDYSSQPITSTIN
  113-  128 (26.78/16.03)	TSLISGSANQIQGGMN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.60|      12|      18|     781|     794|      10
---------------------------------------------------------------------------
  781-  794 (20.21/17.26)	PAgvVYCDKRPEFF
  800-  811 (23.38/12.79)	PA..EYPASSPRLF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.56|      11|      19|     684|     694|      12
---------------------------------------------------------------------------
  684-  694 (18.82/10.81)	EINNESTQTMK
  706-  716 (18.74/10.74)	DIPHTQTSTNK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20449 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SARTTDYSQYHSVQPTQANQNLLLKEQQVHSQAHQAHQYNNTQLHSQADQSNIIFGQKN
2) SFILGNSSTPSPHNKQSSSSISALFNVDSQEHKTPIDHPGTGKDQEPKSLEDVHHHLI
3) TQQINLEKLKQPMQKTNERRKRIGPHGMSPLGSGLLDQCPSPQLSLPSTVNQISRKTASPQWSPLSIPS
170
574
469
228
631
537










Molecular Recognition Features






MoRF SequenceStartStop




1) YVLYFR
377
382