<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20438

Description Uncharacterized protein
SequenceMDEDNNSSGNDSPATVFCIRLKQPSSNLLFKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANPPFWIPIHIVIPERPTESTVFNVIADSPRDSVQFIEWSPSSCPRALLIANFHGRITIWTQPSQGSASLVNDASSWQREHEWRQDLAVVTKWLSGVSPYRWLSSRSSTSTKSTFEEKFLSQQPQAPAGWPNFLCVCSVFSSGSIQLHWSQWPSNHSGASKWFCTSKGLLGAGPSGIMAADAIVTDSGALHVAGVPIVNPSTVVVWEVTPGPGNGFQATPKTTTSNGIPPSLNPPVWDGFASLASYLFSWQEYLFLEAKQGKKLADQDYSDMVALHCSPVSNFSAYVSPEASAQSAATTTWGSGVTAVAFDPTCGGSVIAIVIVEGQYMSPYDPDEGPSITGWRVQRWESSLEPVVLHPIFGNPTSSFGGQPPMQTVWVTKVNKSIPATDYFKSNQAGPTGSTSEGLNTSESDIEKSKRVVFDPFDLPSDVRTLARIVYSAHGGEVAVAFLRGGVHIFSGSSFTPVDNYQINVYSAIASPAFSSTSCCSATVWHDTIKDCTMLKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSLMVGVDWWDAVGCTQSAAEDGIVSLNNVIAVLDADFHSLPSTQHRQQYGPGLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALVNPSALVVEPWLASGETLNSLDHESMTVDPALVLSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGGNRNMVISPTQSAGTPGATQGAQNGTASSSASTPIQAWVQGAIAKISSTSDGVPNAAPNPISGPSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRIQLPRFIGAAKNTDSSHRAQPGAPGKVEEISSAPTKMTPALGRSDELAISRVGQAGSGGKGPEEGPANRSRYGSGNAGQGYTFDEVKVLFLILMDLCKRTSGLAHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEAALGPHMQAGSGGKGPEEGPANRSRYGSGNAGQGYTFDEVKVLFLILMDLCKRTSGLAHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEAALGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNTFGGPWSDPDDLGVDDSSRMSTSDPASFSSVDNNYFQHEAQRLWPRKRRMSERDAAFGLNTSAGLGAYLGIMGSRRDVVTAVWKTGLEGVWFKCIRCLRQTSAFSSQGGNNSNLSTQIFLVKDYICERHFSGLKHPQRYKKIGHDDIIYARAASRGIDPTFISL
Length1305
PositionTail
OrganismArtemisia annua (Sweet wormwood)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Asteroideae> Anthemideae> Artemisiinae> Artemisia.
Aromaticity0.09
Grand average of hydropathy-0.161
Instability index41.89
Isoelectric point6.47
Molecular weight140772.14
Publications
PubMed=29703587

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20438
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     402.81|      89|      89|     932|    1020|       1
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  412-  465 (64.11/26.78)	...VQRWESSLEPVVLHPIFGNPT.......SSFGgqPPMQtVWVTKVNKSIPAT.DYFKSNQAG...........................
  932-  981 (89.23/39.85)	..........................................GSGGKGPEEGPANRSRYGSGNAGQGYTFDEVKVLFLILMDLCKRTSGLAH
  982- 1071 (188.95/91.73)	PLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEAALG..PHMQaGSGGKGPEEGPANRSRYGSGNAGQGYTFDEVKVLFLILMDLCKRTSGLAH
 1072- 1110 (60.52/24.92)	PLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEAALG..PHMQ...................................................
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     180.93|      51|      84|     219|     271|       4
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  219-  271 (88.71/58.36)	WPSNHSGASKWFCTSKGLLGAGPSGIMAADAIVTDSGALHVAgvPIVNPSTVV
  304-  354 (92.21/55.03)	WDGFASLASYLFSWQEYLFLEAKQGKKLADQDYSDMVALHCS..PVSNFSAYV
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     192.63|      62|     438|     107|     188|       5
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  107-  188 (88.60/77.78)	SPSSCPRallianfhgriTIWTQ..............PSQGSASLVNDASSwqrehEWRQdlAVVTK.WLSGVSPYRWLSSRSstSTKSTFEEKFLS
  551-  627 (104.03/51.31)	STSCCSA...........TVWHDtikdctmlkiirvlPPAVPSSQVKANSS.....TWER..AIAERfWWSLMVGVDWWDAVG..CTQSAAEDGIVS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     154.92|      48|     438|     705|     755|       6
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  705-  755 (74.28/58.83)	PWlASGETLNSLDHESM.TVDPALVLSIQAyvDAVLDLASHFITRLRRY....ASF
 1146- 1198 (80.63/52.46)	PW.SDPDDLGVDDSSRMsTSDPASFSSVDN..NYFQHEAQRLWPRKRRMserdAAF
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.32|      11|      15|     479|     489|       7
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  479-  489 (18.10/11.64)	SDIEKSKRVVF
  496-  506 (18.22/11.77)	SDVRTLARIVY
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.87|      16|      17|     784|     799|       9
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  784-  799 (28.70/15.97)	TP..GATQGAQNGTASSS
  802-  819 (24.17/12.23)	TPiqAWVQGAIAKISSTS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.63|      22|     662|     191|     214|      10
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  191-  214 (42.46/24.50)	PQAPA....GWPNF...LC....VCSVFSsgSIQL
  847-  879 (33.17/13.59)	PGTPAvrliGDCHFlhrLCqlllFCFFFR..RIQL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20438 with Med16 domain of Kingdom Viridiplantae
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