<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20427

Description Uncharacterized protein
SequenceMTSSLTTPNIWDTVTELTNSAQNNGSDPLTWSIELSSVLLSAGESVPSVELAELLVSHICWSNNVPIAWKFLEKAVSSRVVPPLLVLALFSTRVTPSRRSHPAAYRLYLELLKRHIFALDSKVNGQNYQKIMESIDDALHLNQIFGLQSCEPGLVLVEFLFSVVWMLLDASLDDENLLELVPEKKSKWPIKSMEMEIEDQNNFGENRIDRHQGLYKMNTITGLEIIGELFRNKVTSSILDLARRNMPTHWGTFMHHVRLLVGNSAALRNSKDITPEALLQLASDNRAQLSRECKTSLQQFSAVMACGSLISSAGQSYGASSSAIWLPIDLFLEDTMDGYVVATTSADETLTDLLKAHQAITQASWQDTFLGLWIAALRLVQREAEAAEGPVPRFDTCLCLLLCTTTLAIVNIVDEEESALLEEDDHKRMHEGSETQVLGKCRRSLVSSLQQLGDYESLLIPPVSVTSIANQAAAKASMFFSGISVVSGYFDGMSLNDMPAASAGNMRHLIVEACIARNLLDTSAYLWPGYVKGHGNQIPRNISGPILGWSSLMKGSPLTPPMMHALVSTPASSLAEVEKIYGIATSGSEEEKISAATVLCGASLTRGWNIQEHTGFFIIKLLSPPVPVDYCGNESHLIVHAPLLNVLLMGISSLDCVQIFSLHGLAPHLAGVLMPICEVFGSLSPTVSWTLPSGERLCPLSVFSNAFTLLLKLWRFHQPPLEHVMGDVTPVGSQLNPEFLLLARNSQLASCGNSSFPPKHRKRRFCDLFTSEPIFLDSFPKLTFWYRQHQACIASTLSDLKPGTSVYQVFDALLSMMFVKLSKGGQSLTTSTSGSSSSSGSIAEDCTLRLKLPAWEILEAVPFVLDAALTACAHGRLSPPDFTTGLKHLAVFLPASMATIVSYLSAETTRGLWKPASMNGTDWPSPAASLAMVENHINKILSATGVDVPSLTEGVTNLTLPLPLAALLSLTITYKVDKVSEVVLSLAAPALNTLGASCPWPCMAIISALWVQKAKRWTDYFVFSASRSVFHHNSHAVVQLLKVCFASAIGLPSSFPVSNGGGVGNLLGHGFGSHSSGGISPVAPGILYLRVHRSVRDIMFMTEEIISLLMHTVKDIVSTGLPFENFEKLRKPKNGMVMRYGEVSLSAAMTRIKLAASLGASLVWITGRLNLIQSLIKETLPSWFISGHKSDPNKGDSGGMIGMLMGYALAYFAVLSGAFGWGVDSVSSGSKKRPIILGSHLEFMASALDGNISLGCNKATWRAYVSGFVSLMVSCAPKWASEIDVAVLKSLSKGLRKWDEEELALALLGVSGVNAMGAAAEMIIKSSV
Length1328
PositionTail
OrganismArtemisia annua (Sweet wormwood)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Asteroideae> Anthemideae> Artemisiinae> Artemisia.
Aromaticity0.07
Grand average of hydropathy0.193
Instability index44.72
Isoelectric point6.22
Molecular weight143898.64
Publications
PubMed=29703587

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20427
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     116.91|      38|     159|     432|     471|       1
---------------------------------------------------------------------------
  432-  471 (61.54/43.58)	GSETQ......VLgkCRRSLVS..SLQQLGDYE..SLLIPPVSVTSIANQ
  587-  634 (55.38/32.83)	GSEEEkisaatVL..CGASLTRgwNIQEHTGFFiiKLLSPPVPVDYCGNE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.02|      23|     159|     976|    1022|       2
---------------------------------------------------------------------------
  637-  661 (36.60/ 9.57)	LIVHAPLLNVLlmGIS.SLDCVQIFS
  984- 1007 (39.42/44.65)	LSLAAPALNTL..GAScPWPCMAIIS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     185.97|      57|     250|     760|     827|       3
---------------------------------------------------------------------------
  696-  754 (96.08/70.18)	RLCPL....SVFSNAFTlLLKLW.RFHQPPLEHVMGDVTPvGSQLNPEF..LLLARNSQLASCGNS
  764-  827 (89.88/81.96)	RFCDLftsePIFLDSFP.KLTFWyRQHQACIASTLSDLKP.GTSVYQVFdaLLSMMFVKLSKGGQS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.90|      11|      27|     115|     125|       4
---------------------------------------------------------------------------
  115-  125 (19.89/11.41)	HIFALDSKVNG
  143-  153 (22.00/13.41)	QIFGLQSCEPG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     152.57|      44|     250|     222|     267|       5
---------------------------------------------------------------------------
   89-  109 (20.83/ 6.01)	.......LFSTRVTPS.....RRSHPAAYRLYL....................
  222-  267 (73.29/41.72)	GLEIIGELFRNKVTSSilDLARRNMPTHWGTFMHHV.......RLLVGNSAAL
  482-  526 (58.45/28.25)	GISVVSGYFD........GMSLNDMPAASAGNMRHLiveaciaRNLLDTSAYL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.02|      13|      27|     367|     379|       8
---------------------------------------------------------------------------
  367-  379 (23.22/11.68)	DTFLGLWIAALRL
  395-  407 (24.80/12.95)	DTCLCLLLCTTTL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     106.39|      32|     671|     542|     574|       9
---------------------------------------------------------------------------
  542-  574 (54.40/36.51)	ISGpILGW..SSLMKGSPLTPPMMHALVSTPASSL
 1215- 1248 (51.99/29.65)	LSG.AFGWgvDSVSSGSKKRPIILGSHLEFMASAL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20427 with Med33 domain of Kingdom Viridiplantae
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