<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20425

Description "Mediator complex, subunit Med23"
SequenceMDYMNLDDKSIGMFWAVSYTMAQPACEMVMTWLTCDGYTELPETNSQANGTVTVRREVNPVPISLLSGFSINLCLQLAIQLEDKMFSGMHEPNIAMVETYTRLLLLQPHSLFRSLLSHLHQRNPGTFNKPGATLLVLEVLNYRLFSLYRYQGKSKTLMYDITKILSTRKGKRGEHRVFRLAENLCLNIIMSLRELFFIRKEGKGPSEFTETLNRVTVMTLAIAIKTRGISDAEHLLYLQTMLEQILATSHHTWSNNTLSYFPAVLRDALIGRIDKRGLAIQAWQQAEATVIHQCTQLLTPPDDPTYVMTYISRSFPQHRQYLCAGAWVLMRGHPENINTGNLGRVLKEFSPEEVTGNVYTMVDVLLHNIQLELQHGRSLQDVISNSCENLANFIWIHELLPPDILLLALIDRDDDPHALRIVVNLMERQELQQRIKLYVSRGNPEHWLQNGVCKRIDLQKALGNHLSWKERYPTYFDDIAARILPIIPLIIYRLIENDAIDPADRVLQLYSSFLHYYPLNFTFVRDLLAYFYGHLPGKLIFRILNVLDIKKIRFSESFPQHVNSTNAIRPPLEYFASLLINLVNNVIPPLPNLNRNPTTNQSGSTNAFESQKAFYQIQDPGTTTQLILETAVIEILSLPVTAAQIVSSFVQIIVIQPTFIQSNHSSHILSSGPSSASTDSLGGCGSNPATTRFNFSKFVSGTGYSYLQMSCVMIQACGLLLAQLPVEFHIQLYAEASRVIKDNKLNSALGLALLDPTWAAQENTSTTLGNMVALLHVFFSNLPIEWLDKAHLLLNQLRPVSSVTVLRIAFRIIGPVLLRLANAHSLFVKTLELLLSMMMDVFGKNTQPSTPVEASDITDLIDFLHHVVHYEGQGGPVQPNSKIKADVLALCGRAIENMCSDVQHLLSHLKTDTSCSIYAATQPQISQNTS
Length930
PositionTail
OrganismArtemisia annua (Sweet wormwood)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Asteroideae> Anthemideae> Artemisiinae> Artemisia.
Aromaticity0.08
Grand average of hydropathy0.015
Instability index40.47
Isoelectric point6.69
Molecular weight104777.80
Publications
PubMed=29703587

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20425
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     130.91|      28|     102|     291|     318|       1
---------------------------------------------------------------------------
  291-  318 (52.62/30.69)	IHQCTQLLTPPDDPTYVMTYISRSFPQH
  396-  417 (35.84/18.65)	IHE....LLPPD..ILLLALIDRDDDPH
  419-  446 (42.44/23.38)	LRIVVNLMERQELQQRIKLYVSRGNPEH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     166.06|      55|     668|      65|     257|       4
---------------------------------------------------------------------------
  201-  257 (87.16/241.92)	EGKG.PSEFTETLnRVTVMTL.AIAIKtRGISDAEHLL.YLQTMLE.QILATSHHTWSNNT
  871-  929 (78.91/ 6.33)	EGQGgPVQPNSKI.KADVLALcGRAIE.NMCSDVQHLLsHLKTDTScSIYAATQPQISQNT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     127.41|      44|     246|     527|     584|       6
---------------------------------------------------------------------------
  527-  584 (59.56/56.25)	LLAYFYGHLPgklifriLNVLD.....IKKIRfsesfPqhVNSTNAIRPPLEYFASLLINLVN
  774-  822 (67.85/34.56)	LLHVFFSNLP.......IEWLDkahllLNQLR.....P..VSSVTVLRIAFRIIGPVLLRLAN
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20425 with Med23 domain of Kingdom Viridiplantae
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