<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20424

Description Uncharacterized protein
SequenceMSTIDTGTNMIGCSSNTLQTGIPQQAITVSSLTPENSTALTTQIRTIVDTPTINPNYPSHPSQPIMCIINSGSNLSGGSSYMAHIENSLIPSKPITMPVRSGETSATPKLISDSVAQISQYTHAYQNQPLLQHAFTNKAVQQPPTYSSANQSNNTLSEQKNQPYRHNPKDQPSHCSRSIPNRQMVVHNSQASKQNSQQSSKQIPGQIQQGTGSRQQRNNDNSLSASVDIKTPNEFPTRDAWREYALRKVRKLKEEYFKELLDIHQSTIESRIKAHIENSLIPSKPITMPVSSGETSATPKLISDSVAQISQYTHAYQNQPLLQHAFTNKAVQQPPTYSSANQSNNTEQKNQPYQYNPKDQPSHCSRSIPNRQMVVHNSQASKQNSQQSSKQIPGQIQQGTGSRQRGNNDNSLSASVDIKTPNEFPTRDAWRDYALRKVHKLKEEYFKELLDIHQSTIESRIKVQLNDNKFQKQRQTPAISTSINASKRSQVPPKLSQSVGPSSRRPTQPETRNSSSLNDGSRQKRPMNPVLVGSSKTRNSSSPKSSQSVGPSSASPVETQKLKTPIQETPNSKDPILHLVDVVKSVSSKSMVSALKDISCVQKVMDIIPDCPPSDSASLLLQYENEPQRKIRRTLNVSLYHDKIFSDEWDIDFLETTMNMKPSVGNKGLILDEIRETNFELLETSLVVVLDTADDYVKILGSQGGTIVKCLYTNVCFPDLCGPQKMPDFVIELLVPVDYPNSSPKIFNAGRNVLSQPWKKLYEDILTRFDLSLPEIPGQISLGDMAREWDASARSVITKFVEGKGGNSFSSRYGSWESA
Length819
PositionTail
OrganismArtemisia annua (Sweet wormwood)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Asteroideae> Anthemideae> Artemisiinae> Artemisia.
Aromaticity0.05
Grand average of hydropathy-0.728
Instability index53.22
Isoelectric point9.17
Molecular weight90972.81
Publications
PubMed=29703587

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20424
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     203.20|      32|      32|     141|     172|       1
---------------------------------------------------------------------------
  121-  159 (39.19/15.70)	....YTH.AYQNQP....llqhaftnkavQQPPTYSSANQSNNTLSEQ
  160-  206 (51.31/23.03)	KNQPYRH.NPKDQPshcsrsipnrqmvvhNSQASKQNSQQSSKQIPGQ
  312-  348 (36.90/14.31)	....YTH.AYQNQP....llqhaftnkavQQPPTYSSANQSNNT..EQ
  349-  395 (49.21/21.75)	KNQPYQY.NPKDQPshcsrsipnrqmvvhNSQASKQNSQQSSKQIPGQ
  520-  546 (26.60/ 8.08)	GSRQKRPmNPVLVG...............SSKTRNSSSPKSS......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     500.76|     128|     188|      84|     271|       2
---------------------------------------------------------------------------
   22-   79 (36.74/12.62)	......IPQQAITV......SSLTPE...NSTALTTQ.irtivdtpTINPNYP....................................SHPSQPI....MCI....................INSGSnlsgGS..........................................................
   84-  271 (231.53/113.88)	HIENSLIPSKPITMPVRSGETSATPKLISDSVAQISQythayqnqpLLQHAFTNKAVqqpptyssanqsnntlseqknqpyrhnpkdqpSHCSRSIPNRQMVVHnsqaskqnsqqsskqipgqIQQGT....GSRQQRNNDNSLSASVDIKTPNEFPTRDAWREYALRKVRKLKEEYFKELLDIHQSTIESR
  275-  460 (232.49/114.37)	HIENSLIPSKPITMPVSSGETSATPKLISDSVAQISQythayqnqpLLQHAFTNKAV..qqpptyssanqsnnteqknqpyqynpkdqpSHCSRSIPNRQMVVHnsqaskqnsqqsskqipgqIQQGT....GSRQRGNNDNSLSASVDIKTPNEFPTRDAWRDYALRKVHKLKEEYFKELLDIHQSTIESR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.45|      10|      49|     497|     506|       3
---------------------------------------------------------------------------
  497-  506 (20.55/10.47)	QSVGPSSRRP
  547-  556 (19.90/ 9.89)	QSVGPSSASP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.53|      13|      15|     466|     480|       5
---------------------------------------------------------------------------
  466-  480 (17.59/11.78)	NDNKfqKQRQTPAIS
  484-  496 (21.94/ 8.67)	NASK..RSQVPPKLS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20424 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) QNQPLLQHAFTNKAVQQPPTYSSANQSNNTEQKNQPYQYNPKDQPSHCSRSIPNRQMVVHNSQASKQNSQQSSKQIPGQIQQGTGSRQRGNNDNSLSASVDIKTPNEFPTRDAWRDYALRK
2) QNQPLLQHAFTNKAVQQPPTYSSANQSNNTLSEQKNQPYRHNPKDQPSHCSRSIPNRQMVVHNSQASKQNSQQSSKQIPGQIQQGTGSRQQRNNDNSLSASVDIKTPNEFPTRDAWREY
3) RIKAHIENSLIPSKPITMPVSSGETSATPKLISDSVAQI
4) TIESRIKVQLNDNKFQKQRQTPAISTSINASKRSQVPPKLSQSVGPSSRRPTQPETRNSSSLNDGSRQKRPMNPVLVGSSKTRNSSSPKSSQSVGPSSASPVETQKLKTPIQETPNSKDP
317
126
271
456
437
244
309
575










Molecular Recognition Features






MoRF SequenceStartStop




NANANA