<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20421

Description REF4-related 1
SequenceMNNNNMSLLWDTVLNDLESKGNDPMIWAMHLSSKLTCNGVILPSPDLAHVLVNHICWENNNPVSWKVIPKRQTQPAAFRLYMELLKRHAFKLKSHVEFQNYEVIMNSIDNVLHLSQIFGIKVNDPGSLLLQFVFSTVWQLVEAALGDEGLLELTEERKFRWNVPQDMELDSPGSYNGKRNEYQEMLQSRNTMMAVELIGLFLQNKVTSRILFLARRNMPTHWSSFIQDIEVLAVNSSSLRNSKVMTPENLLQLISDDRKDMSKDNKTSYLQESHSAMSSSAGLSHKVSGSCLWIPIDLVLEDAMDGTQVDTTSSIEIVTRHVKALQALNGTTWHESFLGLWVAALRLVQRERDPIEGPMPRLDTRLSMLLSITTLVVSDLIEDEENMPQNKMDSQTAQDCKEKRRMDLVSSLQSLGDYESLLTPPPSVIPAANQAAAKAMLFTSGISVGSSAYFDLVNMKDVAINFSGNLHHLIVEACIARNLLDTSAYFWPGYVTGRINQMPHGVSTQVPGWSTFMKGAPLTPVMVNALVSEPASSLVELEKVFEIALKGSDDEKIAAATILCGASFIEGWNVQEHSMYFITRLLSPPLPANYSGNNSHLIAYGPMLNVLLVAIAPVDCVQIFSLHGLVPQLAGSLMPICEVFGSCAPNKSWTLPTGEEISTHAVFSNAFALLLKLWRFNHPPLEYGVGDVPPVGAQLTPEYLLLVRNSQLVSPYKDRNSQRLSEVAKISCPDHIFVDSFPKLKAWYRQHQACLASTVSGLVHSPVHQIVDTLLTMMFRKINRNQPLNSVSGSSSSSGPGSEDMSLRPKLPAWDILEAVPFVVDAALTACAHGRLSPRELCTGLKDLADFLPASLAIIVSYFSAEVSRGVWTHVNMNGTDWPSPAANLANVEEHIRNILAATNVNVPRLFAGISSPFTLPLPLAAFVSLTITYKLDKASQRFLNLAGPALEALAAGCPWPCMIVVASLWTQKAKKWSDFLCFSSSRTVFLHDNNAVAQLLKSCFTATLGLNNSLVSTHGGVGALLGHGFGSNLYGEINPVAPGFLYLRMYRSIRDIMFLRDDILSILMQCVKDIACNGKSLKGKQASLATSLTKVKLAAQLAASILWISGGQGLVQSLINETLPSWFISTHIMDSNENTPTGAVSMLSGYALGYFTVLCGAFAWSVDSSSSVSKWRSKFLGSHMEFLASALNGKITLGCDSVTWHSYVTAFVNLMLGCMPNWVGEVNIEILKRLSHGLRQWNEEELAVMLLEAGGLGTMGAAVELIIDNVLSGKSNCKTDLSTL
Length1285
PositionTail
OrganismArtemisia annua (Sweet wormwood)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Asteroideae> Anthemideae> Artemisiinae> Artemisia.
Aromaticity0.08
Grand average of hydropathy0.084
Instability index45.48
Isoelectric point6.09
Molecular weight141120.03
Publications
PubMed=29703587

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20421
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.36|      21|      97|     148|     175|       1
---------------------------------------------------------------------------
  148-  175 (31.57/36.01)	EGLLEL.TEERKfrwnvpqDMELDSPGSY
  248-  269 (33.79/19.65)	ENLLQLiSDDRK.......DMSKDNKTSY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.74|      22|      93|    1105|    1127|       2
---------------------------------------------------------------------------
 1105- 1127 (36.25/28.38)	SILWISGGQGLVQsLINETLPSW
 1202- 1223 (44.49/30.29)	SVTWHSYVTAFVN.LMLGCMPNW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.72|      12|      93|     584|     597|       3
---------------------------------------------------------------------------
  584-  597 (17.53/13.52)	RLLSPPLpaNYSGN
  679-  690 (24.19/11.74)	RFNHPPL..EYGVG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.06|      26|      97|     520|     545|       4
---------------------------------------------------------------------------
  520-  545 (43.95/26.87)	APLTPVMV...NALVSEPASSLVELEKVF
  616-  644 (44.11/27.00)	APVDCVQIfslHGLVPQLAGSLMPICEVF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     198.17|      65|      97|     809|     882|       5
---------------------------------------------------------------------------
  809-  881 (93.57/74.03)	PKLPAwDIleAVPFVVDAALTACAHGRLSPR..ELCTGLKDLADflPA..SLAIIVSYFSAEVSRGVWTHvnmNGTD
  908-  976 (104.61/54.17)	PRLFA.GI..SSPFTLPLPLAAFVSLTITYKldKASQRFLNLAG..PAleALAAGCPWPCMIVVASLWTQ...KAKK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.87|      15|     315|     662|     676|       9
---------------------------------------------------------------------------
  662-  676 (26.71/20.59)	STHAVF...SNAFALLLK
  985- 1002 (21.16/14.52)	SSRTVFlhdNNAVAQLLK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      28.93|       8|     453|     426|     435|      12
---------------------------------------------------------------------------
  426-  435 (12.30/12.41)	PSviPAANQA
  883-  890 (16.64/ 8.82)	PS..PAANLA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20421 with Med33 domain of Kingdom Viridiplantae
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