<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20421

Description REF4-related 1
SequenceMNNNNMSLLWDTVLNDLESKGNDPMIWAMHLSSKLTCNGVILPSPDLAHVLVNHICWENNNPVSWKVIPKRQTQPAAFRLYMELLKRHAFKLKSHVEFQNYEVIMNSIDNVLHLSQIFGIKVNDPGSLLLQFVFSTVWQLVEAALGDEGLLELTEERKFRWNVPQDMELDSPGSYNGKRNEYQEMLQSRNTMMAVELIGLFLQNKVTSRILFLARRNMPTHWSSFIQDIEVLAVNSSSLRNSKVMTPENLLQLISDDRKDMSKDNKTSYLQESHSAMSSSAGLSHKVSGSCLWIPIDLVLEDAMDGTQVDTTSSIEIVTRHVKALQALNGTTWHESFLGLWVAALRLVQRERDPIEGPMPRLDTRLSMLLSITTLVVSDLIEDEENMPQNKMDSQTAQDCKEKRRMDLVSSLQSLGDYESLLTPPPSVIPAANQAAAKAMLFTSGISVGSSAYFDLVNMKDVAINFSGNLHHLIVEACIARNLLDTSAYFWPGYVTGRINQMPHGVSTQVPGWSTFMKGAPLTPVMVNALVSEPASSLVELEKVFEIALKGSDDEKIAAATILCGASFIEGWNVQEHSMYFITRLLSPPLPANYSGNNSHLIAYGPMLNVLLVAIAPVDCVQIFSLHGLVPQLAGSLMPICEVFGSCAPNKSWTLPTGEEISTHAVFSNAFALLLKLWRFNHPPLEYGVGDVPPVGAQLTPEYLLLVRNSQLVSPYKDRNSQRLSEVAKISCPDHIFVDSFPKLKAWYRQHQACLASTVSGLVHSPVHQIVDTLLTMMFRKINRNQPLNSVSGSSSSSGPGSEDMSLRPKLPAWDILEAVPFVVDAALTACAHGRLSPRELCTGLKDLADFLPASLAIIVSYFSAEVSRGVWTHVNMNGTDWPSPAANLANVEEHIRNILAATNVNVPRLFAGISSPFTLPLPLAAFVSLTITYKLDKASQRFLNLAGPALEALAAGCPWPCMIVVASLWTQKAKKWSDFLCFSSSRTVFLHDNNAVAQLLKSCFTATLGLNNSLVSTHGGVGALLGHGFGSNLYGEINPVAPGFLYLRMYRSIRDIMFLRDDILSILMQCVKDIACNGKSLKGKQASLATSLTKVKLAAQLAASILWISGGQGLVQSLINETLPSWFISTHIMDSNENTPTGAVSMLSGYALGYFTVLCGAFAWSVDSSSSVSKWRSKFLGSHMEFLASALNGKITLGCDSVTWHSYVTAFVNLMLGCMPNWVGEVNIEILKRLSHGLRQWNEEELAVMLLEAGGLGTMGAAVELIIDNVLSGKSNCKTDLSTL
Length1285
PositionTail
OrganismArtemisia annua (Sweet wormwood)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Asteroideae> Anthemideae> Artemisiinae> Artemisia.
Aromaticity0.08
Grand average of hydropathy0.084
Instability index45.48
Isoelectric point6.09
Molecular weight141120.03
Publications
PubMed=29703587

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20421
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.36|      21|      97|     148|     175|       1
---------------------------------------------------------------------------
  148-  175 (31.57/36.01)	EGLLEL.TEERKfrwnvpqDMELDSPGSY
  248-  269 (33.79/19.65)	ENLLQLiSDDRK.......DMSKDNKTSY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.74|      22|      93|    1105|    1127|       2
---------------------------------------------------------------------------
 1105- 1127 (36.25/28.38)	SILWISGGQGLVQsLINETLPSW
 1202- 1223 (44.49/30.29)	SVTWHSYVTAFVN.LMLGCMPNW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.72|      12|      93|     584|     597|       3
---------------------------------------------------------------------------
  584-  597 (17.53/13.52)	RLLSPPLpaNYSGN
  679-  690 (24.19/11.74)	RFNHPPL..EYGVG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.06|      26|      97|     520|     545|       4
---------------------------------------------------------------------------
  520-  545 (43.95/26.87)	APLTPVMV...NALVSEPASSLVELEKVF
  616-  644 (44.11/27.00)	APVDCVQIfslHGLVPQLAGSLMPICEVF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     198.17|      65|      97|     809|     882|       5
---------------------------------------------------------------------------
  809-  881 (93.57/74.03)	PKLPAwDIleAVPFVVDAALTACAHGRLSPR..ELCTGLKDLADflPA..SLAIIVSYFSAEVSRGVWTHvnmNGTD
  908-  976 (104.61/54.17)	PRLFA.GI..SSPFTLPLPLAAFVSLTITYKldKASQRFLNLAG..PAleALAAGCPWPCMIVVASLWTQ...KAKK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.87|      15|     315|     662|     676|       9
---------------------------------------------------------------------------
  662-  676 (26.71/20.59)	STHAVF...SNAFALLLK
  985- 1002 (21.16/14.52)	SSRTVFlhdNNAVAQLLK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      28.93|       8|     453|     426|     435|      12
---------------------------------------------------------------------------
  426-  435 (12.30/12.41)	PSviPAANQA
  883-  890 (16.64/ 8.82)	PS..PAANLA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20421 with Med33 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




NANANA









Molecular Recognition Features






MoRF SequenceStartStop




NANANA