<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20419

Description Transcription cofactor
SequenceMPTMETRSQNPVPDSMQASNCLNPTDPASLDSTDQTPNANGGDWQEEVYQKIKAMKDLYLHDLNDMRQKILGKLQHRADASYFNYSVASLDSTDQTPNANCGDWQEEVYQKIKAMKDLYLHDLNDMRQKILGKLQHHDSLPQQPKNEQLEKLEVFKNMLERFMAFLQIPKQSILPSYKDKLGTYEKQIVYIINHNRKPEAPQQHKSSLDSTVQTRNANSGDWQEEVHQKIIVMKDLYLHDLNDMHQKLLGKLQHHDSLPQQPKNEQLEKLKVFKNVLERFMAFLQIPKQSILPSYKDKLGTYEKQIVNVINSNRRKPEAPQQHKSSFDSTDHTRSANGGDWQEEAYQKNRLHQERGFRSKCSNIVLKKETDEHNYRQPKKQRTAVSEVVEGINVVEATNNTKMGHRRVKSITLTSQVNGGHSLDNARIELPDLNVPYTVLRQFLDVLLSLKLL
Length453
PositionTail
OrganismArtemisia annua (Sweet wormwood)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Asteroideae> Anthemideae> Artemisiinae> Artemisia.
Aromaticity0.06
Grand average of hydropathy-0.906
Instability index46.42
Isoelectric point8.60
Molecular weight52471.72
Publications
PubMed=29703587

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20419
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     633.14|     116|     116|      95|     210|       1
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   24-   87 (74.83/39.55)	..PTDP....ASLDStdQTPNANGGDWQEEVYQKIKAMKDLYLHDLNDMRQK...ILGKLQHRaDasyfnySV.........................................................
   88-  195 (216.49/127.51)	..........ASLDStdQTPNANCGDWQEEVYQKIKAMKDLYLHDLNDMRQK...ILGKLQHH.D......SLPQQPKNEQLEKLEVFK..NMLERFMAFLQIPKQSILPSYKDKLGTYEKQIVYIINHN
  196-  313 (239.23/141.63)	RKPEAPQQHKSSLDStvQTRNANSGDWQEEVHQKIIVMKDLYLHDLNDMHQK...LLGKLQHH.D......SLPQQPKNEQLEKLKVFK..NVLERFMAFLQIPKQSILPSYKDKLGTYEKQIVNVINSN
  315-  396 (102.60/56.80)	RKPEAPQQHKSSFDStdHTRSANGGDWQEEAYQKNR......LHQERGFRSKcsnIVLKKETD.E......HNYRQPKKQRTAVSEVVEgiNVVE...................................
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20419 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IVNVINSNRRKPEAPQQHKSSFDSTDHTRSANGGDWQEEAYQKN
2) MPTMETRSQNPVPDSMQASNCLNPTDPASLDSTDQTPNANGGDWQEE
306
1
349
47










Molecular Recognition Features






MoRF SequenceStartStop




NANANA