<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20403

Description "WW domain, FF domain protein"
SequenceMANNSQYPGIQPRHPFDPMGPPPNAYPSVPMQFHPAGPPRPGPPYMVSQQFLPVGRPNMVSQSMQHLPPRPGPPPPPMAHGLVTPPPPPPPAQAFSVPDGQSSRLLLSISPQAQQAVPINNNYMPGQNGPVALPINYNLPTSATTQVPPLPPAEQTSVAPSITVTTDPPKALEMAPSDWIEHTSHKGKSWEKPLDLMSPIERADATTNWKEYKAPDGRKYYYNKVTEQSKWRIPDELKFAREQVKTTCTTEPTKDPVNEPLVPTVIDSPSSQPQLVSSPVPVAPSIAAVQSGSLLNSEMSAGATESPKVTTNAAEQTAVPATPALSNTEDILVKEAVVAENGTPADNIEESSANIAALEENAVELEPLVYENKQEAKNAFKNLLETANIASDWIWDQAMRVIIKDRRYTALRTLAERKQAFSEFIAQKKKQEAEERRHKQKKAREDFKKMLEDSKDLTSSTKWREAILILEDDDRFKAVERPKEREDLFDDHITELEKKERSKALEEHKKYRKEYIEFLKSCDFITASSQWRRVQDRLETNESCSRLEKLDRLEIFQEYIRELEKDEEEQRKLRIEELRKTERKNRDEFRKLMEGHSASGMLTSKTTWRDYLIKVKDLPAYAALSSNGSGATPKELFEDVIEELEKQYSDDRDKIKEVVKMRKVSVLSSWTLEDFKNAIAEDISSPAISDVNLKIIFDELLERVREREEKEAKRRKRLAEDFYISLTASKEITWCSRWEDFLPLFEVESWYTAEESFFKEIFDKYISELKRARDERKRREEKAKDRDRRTEKYRRDKDSRSKKDKRRKDDTDSENGDDKGESGSHEENRSGRDKDKKHRRRYSDDMSMDESRDSHRHSAERKKTKQLDQQPPIEYERHKRYKRDHRRVDHDDQKEAEDGEVW
Length902
PositionUnknown
OrganismArtemisia annua (Sweet wormwood)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Asteroideae> Anthemideae> Artemisiinae> Artemisia.
Aromaticity0.07
Grand average of hydropathy-1.055
Instability index66.36
Isoelectric point6.04
Molecular weight104046.38
Publications
PubMed=29703587

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats
>MDP20403
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.14|      14|      51|      13|      27|       1
---------------------------------------------------------------------------
    7-   25 (23.92/12.39)	YPgiqpRHpFDPMGPPPNA
   26-   42 (26.22/ 9.43)	YP.svpMQ.FHPAGPPRPG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      73.98|      21|      21|     771|     791|       2
---------------------------------------------------------------------------
  771-  788 (23.82/ 7.86)	......RARDERKRREE..KAKDRDR
  789-  811 (25.35/ 8.77)	RTEkyrRDKDSRSKKDK..RRKD.DT
  847-  869 (24.80/ 8.44)	SMD...ESRDSHRHSAErkKTKQLDQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.14|      12|      20|     252|     270|       3
---------------------------------------------------------------------------
  252-  265 (17.94/ 8.96)	P..TKDPVnePLVPTV
  273-  286 (16.20/ 9.77)	PqlVSSPV..PVAPSI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     424.99|      63|      65|     373|     435|       4
---------------------------------------------------------------------------
  373-  433 (86.85/46.42)	...........KQ.EAKN..AFKNLLE......TA.NIASDWI.....WDQAMRVIIKD.RRYT.....ALRT...LAERKQAFSEFIAQKKKQEA
  434-  501 (78.30/41.17)	EE......rrhKQkKARE..DFKKMLE......DSkDLTSSTK.....WREAILILEDD.DRFK.....AVER...PKEREDLFDDHITELEKKER
  506-  568 (65.45/33.28)	EE.........HK.KYRK..EYIEFLK......SC.....DFItassqWRR.....VQD.RLETnescsRLEK...L.DRLEIFQEYIRELEKDEE
  569-  649 (67.04/34.26)	EQrklrieelrKT.ERKNrdEFRKLME..ghsaSG.MLTSKTT.....WRDYL.IKVKDlPAYA.....ALSSngsGATPKELFEDVIEELEKQYS
  650-  708 (66.95/34.21)	DD.........RD.KIKE..VVK..MR......KV.SVLSSWT.....LEDFKNAIAED.ISSP.....AISD...V.NLKIIFDELLERVRERE.
  709-  770 (60.39/30.18)	...........EK.EAKR..R.KRLAEdfyislTA.SKEITWC...srWEDFLPLFEVE.SWYT.....AEES...F..FKEIFDKYISELK....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.73|      15|      15|     159|     173|       5
---------------------------------------------------------------------------
  159-  173 (27.09/14.89)	APS..ITVTTDPPKALE
  175-  191 (24.64/12.91)	APSdwIEHTSHKGKSWE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.23|      19|      19|     116|     134|       6
---------------------------------------------------------------------------
   59-   77 (35.08/15.89)	MVSQSMQHLPPRPGPPPPP
  116-  134 (35.15/15.93)	AVPINNNYMPGQNGPVALP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.66|      17|      18|     310|     327|       7
---------------------------------------------------------------------------
  310-  327 (24.03/19.50)	TTNAAEQTAVPA...TPAlSN
  328-  347 (20.63/11.11)	TEDILVKEAVVAengTPA.DN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.57|      14|      60|      84|      97|       8
---------------------------------------------------------------------------
   84-   97 (30.73/11.62)	TPPPPPPPAQAFSV
  145-  158 (27.84/ 9.98)	TQVPPLPPAEQTSV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20403 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AREQVKTTCTTEPTKDPVNEPLVPTVIDSPSSQPQLVSSPVPVA
2) MANNSQYPGIQPRHPFDPMGPPPNAYPSVPMQFHPAGPPRPGPPYMVSQQFLPVGRPNMVSQSMQHLPPRPGPPPPPMAHGLVTPPPPPPPAQAFSVPDGQSSRLLLSISPQAQQAVPINNNYMPGQNGPVALPINYNLPTSATTQVPPLPPAEQTSVAPSITVTTDPPKALEMAPSDWIEHTSHKGK
3) RDERKRREEKAKDRDRRTEKYRRDKDSRSKKDKRRKDDTDSENGDDKGESGSHEENRSGRDKDKKHRRRYSDDMSMDESRDSHRHSAERKKTKQLDQQPPIEYERHKRYKRDHRRVDHDDQKEAEDGEVW
4) SLLNSEMSAGATESPKVTTNAAEQTAVPATPAL
240
1
773
293
283
188
902
325










Molecular Recognition Features






MoRF SequenceStartStop




1) QPPIEYERH
870
878