<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20402

Description "WW domain, FF domain protein"
SequenceMANNSQYPGIQPRHPFDPMGPPPNAYPSVPMQFHPAGPPRPGPPYMVSQQFLPVGRPNMVSQSMQHLPPRPGPPPPPMAHGLVTPPPPPPPAQAFSVPDGQSSRLLLSISPQAQQAVPINNNYMPGQNGPVALPINYNLPTSATTQVPPLPPAEQTSVAPSITVTTDPPKALEMAPSDWIEHTSHKGKSWEKPLDLMSPIERADATTNWKEYKAPDGRKYYYNKVTEQSKWRIPDELKFAREQVKTTCTTEPTKDPVNEPLVPTVIDSPSSQPQLVSSPVPVAPSIAAVQSGSLLNSEMSAGATESPKVTTNAAEQTAVPATPALSNTEDILVKEAVVAENGTPADNIEESSANIAALEENAVELEPLVYENKQEAKNAFKNLLETANIASDWIWDQAMRVIIKDRRYTALRTLAERKQAFSEFIAQKKKQEAEERRHKQKKAREDFKKMLEDSKDLTSSTKWREAILILEDDDRFKAVERPKEREDLFDDHITELEKKERSKALEEHKKYRKEYIEFLKSCDFITASSQWRRVQDRLETNESCSRLEKLDRLEIFQEYIRELEKDEEEQRKLRIEELRKTERKNRDEFRKLMEGHSASGMLTSKTTWRDYLIKVKDLPAYAALSSNGSGATPKELFEDVIEELEKQYSDDRDKIKEVVKMRKVSVLSSWTLEDFKNAIAEDISSPAISDVNLKV
Length695
PositionUnknown
OrganismArtemisia annua (Sweet wormwood)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Asteroideae> Anthemideae> Artemisiinae> Artemisia.
Aromaticity0.06
Grand average of hydropathy-0.771
Instability index63.29
Isoelectric point5.57
Molecular weight78368.57
Publications
PubMed=29703587

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20402
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     237.03|      50|      51|      13|      62|       1
---------------------------------------------------------------------------
   13-   62 (102.89/36.41)	RH.PFDPMGPPPNAYPSVPMQFHPAGPPRPGPP...YMV...............SQQFLPVGRPNMVSQ
   65-  127 (69.85/22.89)	QHlPPRP.GPPP.P.P...MAHGLVTPPPPPPPaqaFSVpdgqssrlllsispqAQQAVPINNNYMPGQ
  132-  174 (64.29/20.62)	AL.PIN.YNLPTSATTQVP.PLPPAEQTSVAPS...ITV...............TTD..PPKALEM...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     354.10|      63|      65|     373|     435|       2
---------------------------------------------------------------------------
  373-  435 (94.85/62.86)	KQ.EAKNAFKNLLE....TA.N.IASDWIWDQAMRVIIKD.RRYTALRT...LAERKQAFSEFIAQKKKQEA....EE
  439-  507 (87.23/57.19)	KQkKAREDFKKMLE....DSkD.LTSSTKWREAILILEDD.DRFKAVER...PKEREDLFDDHITELEKKERskalEE
  508-  570 (90.26/59.45)	HK.KYRKEYIEFLK....SC.DfITASSQWRRVQDRLETN.ESCSRLEK...L.DRLEIFQEYIRELEKDEE....EQ
  582-  651 (81.76/53.13)	ER.KNRDEFRKLMEghsaSG.M.LTSKTTWRDYL.IKVKDlPAYAALSSngsGATPKELFEDVIEELEKQYS....DD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.46|      17|      18|     247|     263|       3
---------------------------------------------------------------------------
  246-  262 (27.70/12.75)	TTCTTEPTKDPVNEPLV
  284-  300 (19.76/ 7.11)	PSIAAVQSGSLLNSEMS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      74.62|      18|      18|     310|     327|       4
---------------------------------------------------------------------------
  304-  321 (27.38/14.41)	TESPKV......TTNAAEQTAVPA
  322-  339 (27.33/14.37)	TPALSN......TEDILVKEAVVA
  343-  365 (19.92/ 8.62)	TPA.DNieessaNIAALEENAVEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.09|      14|      29|     175|     188|       5
---------------------------------------------------------------------------
  175-  188 (26.79/17.15)	APSDWIEHTSHKGK
  205-  218 (26.30/16.70)	ATTNWKEYKAPDGR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20402 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AREQVKTTCTTEPTKDPVNEPLVPTVIDSPSSQPQLVSSPVPVA
2) MANNSQYPGIQPRHPFDPMGPPPNAYPSVPMQFHPAGPPRPGPPYMVSQQFLPVGRPNMVSQSMQHLPPRPGPPPPPMAHGLVTPPPPPPPAQAFSVPDGQSSRLLLSISPQAQQAVPINNNYMPGQNGPVALPINYNLPTSATTQVPPLPPAEQTSVAPSITVTTDPPKALEMAPSDWIEHTSHKGK
3) SLLNSEMSAGATESPKVTTNAAEQTAVPATPAL
240
1
293
283
188
325










Molecular Recognition Features






MoRF SequenceStartStop




1) GRKYYYNK
217
224