<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20395

Description Mediator complex subunit Med23
SequenceMVETYTRLLLIQPHSLFRSHLSHLHQRNPSILNKPSATLLVLEILNYRLFSLYRYQGKSKTLMYDVTKILSTLKGKRGDHRVFRLAENLCMNLILSLREFFFVRKEGKGPTEFTETLNRITVVNLAIIIKTRGIADAEHLLYLQTMLEQILATSQHTWSGKTLRYFPPVLCDALIGRIDNRGLSIQAWQQAEATVINQCTQLLTPSANPTYVMTYINTSFPQHRKYLCAGAWVLMRGHPENINSANLGRVLREFSPEEVTANIYAMVDVLLHNMQMELQHGHLLQDLIMKACANLAYFIWNHELLPLDILLLALIDRDDDPHALRIVVNLLERQEIQQRIKFYVANRGKPEHWLQTGPFKRIDLQKALGNHLSWKERYPTFFDDIAARLLPVIPLIIYRLIENDAAEAADRVLQFYSTFLHYYPLNVTFVRDILAYFYGHLPGKLIFRILNVLDIKKMPFSESFPHHVNASNAMCPPLEYFASLLFNIVHNVIPQCHSKVDTSNNGARTIINRNPTSQPGSTNAYEGQKAFYQIQDPGTSTQLILETAIIEIMSLPVTAAQIVTALVQIIVHIQATLTQSNQGFHGPSTSSGQGSALPASPSGASTDSLGRGRQTPNPMGFVSRSGYASQQLSCLMIQACGLLLAQLPAEFHIQLYAEASRVIKETWWLTDAKRSTSELDSAVGYALLDPTWAAQDNTSTVIGNVVALLHSFFSNLPQEWLDKTHLLVNHLRPIKSVAMLRIAFRIVAPLLPRLANAHNLFSKTLELLLNMMVDVFGRNSQPSTPVEASEITDLIDFLHHIVHYEGQGGPVQPNSKARPDVLALCGRAIENLRTDVQHLLSHLKTDASGSIYAATHPKLFQSPS
Length864
PositionTail
OrganismArtemisia annua (Sweet wormwood)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Asteroideae> Anthemideae> Artemisiinae> Artemisia.
Aromaticity0.08
Grand average of hydropathy-0.033
Instability index43.18
Isoelectric point8.60
Molecular weight97290.14
Publications
PubMed=29703587

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20395
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     460.32|     115|     312|     163|     278|       1
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  163-  278 (196.65/97.73)	LRYFPPVLCDALIGRID..........................NRGLSIQAWQQAEA...........................TVINQCTQLLTPSANPTYVMTYIN.TSFP.QHRKYLCAGAWVLMRGHPENINSANLGRVLREFS......PEEVTAN..IYAMVDVLLHnMQMEL
  305-  428 (113.27/51.76)	LPL..DILLLALIDRDDdphalrivvnllerqeiqqrikfyvaNRG.KPEHWLQ..............................TGPFKRIDLQKALGNHLSWKERYP.TFFD.DIAARLLPVIPLIIYRLIENDAAEAADRVLQFYStflhyyPLNVT....................
  434-  577 (150.40/70.91)	LAYFYGHLPGKLIFRIL..........................NV.LDIKKMPFSESfphhvnasnamcppleyfasllfnivhNVIPQCHSKVDTSNNGARTIINRNpTSQPgSTNAYEGQKAFYQIQ.DPGTSTQLILETAIIEIM......SLPVTAAqiVTALVQIIVH.IQATL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.81|      14|      15|     589|     603|       3
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  589-  603 (22.26/14.21)	TSS.GQGSALPaSPSG
  606-  620 (24.55/11.60)	TDSlGRGRQTP.NPMG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20395 with Med23 domain of Kingdom Viridiplantae
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