<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20393

Description "Transcription elongation factor, TFIIS/CRSP70"
SequenceMSNLLLDDLRNFLHITNVDIFDVIKMAIRVAAAERLDDFRTERDNIAEMLYRYSCNLINRNKLQCINGSSTESKDDQENREWRHDVAANKDISVMDQEEQKQDMPTSKPQRSLKVRITLKKAEIDSEKDSVAKGPITPDLKVEHSTNLIDEVLRIKGIIDKGIEDELVLCDSLKKLQNMEISMETLEKTGIGKTVSLLRKNVSKDVSETATKLIKAWKDMVDKSLKNKSSIAKPVSEKAKNQQSSVTCDQRCKPRDSEVKTGDQKGPTSTIIEKKLEASKRKLQRSYKEVECMKKKRKIQVLQLHELPPQNHHIKPVNKQLKRCINTRC
Length329
PositionUnknown
OrganismArtemisia annua (Sweet wormwood)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Asteroideae> Anthemideae> Artemisiinae> Artemisia.
Aromaticity0.02
Grand average of hydropathy-0.786
Instability index46.47
Isoelectric point9.24
Molecular weight37736.11
Publications
PubMed=29703587

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
translation elongation factor activity	GO:0003746	IEA:UniProtKB-KW

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20393
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.78|      23|      27|     204|     230|       1
---------------------------------------------------------------------------
  204-  230 (34.05/29.64)	KDVSETAtkliKAWKDMV..DKSLKNKSS
  233-  257 (36.72/22.24)	KPVSEKA....KNQQSSVtcDQRCKPRDS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.68|      12|      26|     128|     140|       2
---------------------------------------------------------------------------
  128-  140 (16.24/13.04)	KDSVAKGpITPDL
  156-  167 (20.44/10.79)	KGIIDKG.IEDEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.03|      13|      18|      76|      90|       4
---------------------------------------------------------------------------
   76-   90 (19.95/20.20)	DQEnrEWRHDVAANK
   96-  108 (24.08/15.94)	DQE..EQKQDMPTSK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20393 with Med26 domain of Kingdom Viridiplantae
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