<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20390

Description Uncharacterized protein
SequenceMMTWTRRVEEMTKHAQMKATDALIWSIEVKKMLDDNGVVTPSTEVAELLVNDICWGNNVPIAWKYLEKALVVRIVSPLFVLALLSESVIPRRRSQPAAYRLYLELLKRYVVPLASEVNGPKYRKIMESIDDVLHLSQRFSIVSKEPGLLLVEFVFAIVWQLLDASLDDEGLLDLVPEKKSTWSIKPQDMEIDDHNFGEKKMDRSDRLYKTNTTLAIEIIGELYRNKVTSRILYLARLNMPVQWGSFIYNLRLLAANSISLRNSKEITPEALLQLTSDSRVLPSGECKIMSMQQFHASFASQSLASSATSRHGVSHSAVWLPIDLFLEDTMEGAVVATTSAAETLAGLLKAHQALTQASWQDAFLGLWMAALRLVQREGNAVEGPVPSIDACLCLLICITTLAIVAIVDEEESALIEGGCMEMRSETIVLGNCRKSLVSSLQQLGDFEDLLIPPPSAASLANQAAAKAMMFLSGVGVGSGYPDGASLNDIPVTCSGDLRHLIVEACIARHLLDTSAYLWPGYVKGHTNQVSRAITGQVPGWSSLMKGSPLTPQMVHALVSTPASSLAEIEKLYGMATDGSDSDKISVATILCGASLTRGWNIQEHIGFFIIKMLSPPIPIDYAGSESHLLACAPLLNVLLVGISSIDCVQIISLHGLVPLLAGVLMPICEVFGSCSPAVSWTLPTGEHLYPLAVFSNAFTLLLKLWRFDQPPAEQGMGNAAPVTSQLTPEFLLLARNSQLTSRGNSLKDQKKRKSSFIQCDLSSAGPLFLDSFPKLKLWYRQHQACIASTLFDLKPGTPIYQNFDALLNIMFRKMNRGGEPLTSSTSGSSNSSVSIAEDCAFRLKVPAWDILEAVPFVVDAALTACANGRLSPRELTTGLKDLTDLLPVSLAIIVSYLSAETTRGLWKPASMNGTDWPSPATNLSMVEQNINKILAATGVDVPSLSAGGTTSASLPLPLAALVSLTITYKVDKVTEPLLNLVGPTVTTIGAGCPWPSMSIIAALWTQKAKRWTDHLVFTASRTVFHHSNDAVVQLLKVCFQSTLGLNSPIGGIGNLLGHGFGSHCTGGIAAVAPGILYLRVHRSIRDVMFMTEEIVSLLLQSVKDIVSTGIPIENLKRPKSGTIVRYGEVSLSLAMTRIKLAASLGASLVWITGGLNLIQTLIKETLPCWFISVHRSDLNKVDSGGMIGMLKGYALAHFTVLSGAFAWGVDSVSSSSKKRPVILEAHLGFMARALDGKTSLGCNRATWRAYVSGFVSLMVSCTPKWVHEVDVEILRSLSRGLRKWDEEELALALLRIGGVSSMGAAAEFIVESSV
Length1314
PositionTail
OrganismArtemisia annua (Sweet wormwood)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Asteroideae> Anthemideae> Artemisiinae> Artemisia.
Aromaticity0.07
Grand average of hydropathy0.225
Instability index41.78
Isoelectric point6.53
Molecular weight142474.82
Publications
PubMed=29703587

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20390
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     174.58|      55|     155|    1095|    1151|       1
---------------------------------------------------------------------------
 1095- 1151 (80.87/54.74)	VSLLLQSVKDIVStGIPIENLKRPKSGtIVRYGEVSLSLAMTRIKLAASLGASLVWI
 1255- 1309 (93.71/55.17)	VSLMVSCTPKWVH.EVDVEILRSLSRG.LRKWDEEELALALLRIGGVSSMGAAAEFI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.86|      20|      20|      81|     100|       2
---------------------------------------------------------------------------
   81-  100 (33.69/19.41)	LALLSESVIP.RRRSQPAAYR
  103-  123 (30.17/16.67)	LELLKRYVVPlASEVNGPKYR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     118.12|      41|     159|     124|     170|       3
---------------------------------------------------------------------------
  124-  170 (53.30/51.80)	KIMeSIDDvLHLSqrF...SIVSKEPGLLLVEfvFAIVWQLLDASLDD..EG
  287-  332 (64.81/39.21)	KIM.SMQQ.FHAS..FasqSLASSATSRHGVS..HSAVWLPIDLFLEDtmEG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.11|      11|     159|      25|      35|       4
---------------------------------------------------------------------------
    4-   14 (20.64/15.46)	WTRRVEEMTKH
   25-   35 (19.46/14.12)	WSIEVKKMLDD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     251.79|      82|     555|     333|     416|       7
---------------------------------------------------------------------------
  333-  416 (126.03/93.49)	AVVATTSAAETLAGLLKAhQALTQASWQDAFLGLWMAAlRLVQREGNAVEGPVPSI......DACLCL.LICITTLAIVAIVDEEESALIE
  891-  979 (125.76/83.88)	AIIVSYLSAETTRGLWKP.ASMNGTDWPSPATNLSMVE.QNINKILAATGVDVPSLsaggttSASLPLpLAALVSLTITYKVDKVTEPLLN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     136.09|      41|     555|      37|      77|       9
---------------------------------------------------------------------------
   37-   77 (70.30/51.29)	GVVTPSTEVAELLVNDICWGNNVPIAWKYLEKA..LVVRIVSP
  573-  615 (65.79/47.46)	GMATDGSDSDKISVATILCGASLTRGWNIQEHIgfFIIKMLSP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20390 with Med33 domain of Kingdom Viridiplantae
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