<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20382

Description "Transcription elongation factor, TFIIS/CRSP70"
SequenceMSNLLLDDLRNFLHITNADIFDFIKMAIRVAAAERLDDFRTERDNIAEMLYRYSCDLINRNKLQCINGSSTESQDDQENREWRHDVAANEDISVMDQEDQKQDMPTSKPQRSLKVRISLKKAETDSEKDSVAKGPITPDLKVEHSTNLIDEVLRIKGVIDKDIEDELVLCDSLKKLQNMEISMETLENTGIGKTVSLLRKHVSKEVSETARKIIKAWKDMVDKSLKDKSSIAKPVSERAKNQQSLVTCDQPRDFDVKTGDQKGPTSTIIEKKLEASKRKLHRSYEEVECMKKKRKIQVLQLHELPPQNHHIKPVNKRVKRCTNMRC
Length326
PositionUnknown
OrganismArtemisia annua (Sweet wormwood)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Asteroideae> Anthemideae> Artemisiinae> Artemisia.
Aromaticity0.03
Grand average of hydropathy-0.802
Instability index46.34
Isoelectric point8.52
Molecular weight37595.63
Publications
PubMed=29703587

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
translation elongation factor activity	GO:0003746	IEA:UniProtKB-KW

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20382
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     303.90|      76|      77|     164|     240|       1
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   90-  162 (81.26/38.18)	EDISVM.DQEDQKQDMPTSK...PQRSLKVRISLKKA..ETDSEKDSVAKgPITPDLKvehstNLID.EVLRIKGVIDKD.....
  164-  239 (115.85/58.05)	EDELVLCDSLKKLQNMEISMETLENTGIGKTVSLLRK..HVSKEVSETAR.KIIKAWK.....DMVD.KSLKDKSSIAKPVSERA
  242-  318 (106.80/53.92)	QQSLVTCDQPRDFDVKTGDQKGPTSTIIEKKLEASKRklHRSYEEVECMK.K..KRKI.....QVLQlHELPPQNHHIKPVNKRV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20382 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) INGSSTESQDDQENREWRHDVAANEDISVMDQEDQKQDMPTSKPQRSLKVRISL
66
119










Molecular Recognition Features






MoRF SequenceStartStop




1) RKIIKAWKDMV
211
221