<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20378

Description Pre-mRNA-processing protein 40A
SequenceMDNNNPQNQSLRPPAIGSQGFGTNYSMQFRPGVPAQPGHPYMQPASGTQQYRPMGQPGQFSQPMQQMPARPGQPAPSSQPMPMSYMQQPPQYQNPAAGPGVPHSSYAFTAPPFGQPTNVSSQFHAVSQMHTPVAPTGGQPWMPSGNQGPGNVTPVSQPGQQPSTTAPTNQQASSTGQEPSAADWQEFTAADGRRYYYNKRTKQSSWEKPMELMTPLERADASTVWKEFTTAEGKKYYYNKDTKQSKWTIPEELKLAREQAEKEASRGTQSPAILTPSVIDQPSASASSANGVSSSPVAVMPVIPVGSAPPSVASESSSLASPLIPAVGGSSMVSASMHSSPLGKTEKSSSHGAPEAVDGVSVQDTEEAKKGMAAAGKVNTTPSEEKVVDGETFIYATKQEAKAAFKSLLEDSNVRADWNWEQAMRVIINDKRYGALKALGERKQAFNEYLMQRKKLEAEERRLKQRKAKEEFTKMLEESKELTSSMRWSKAIALFEDDERYKAVDRSSDREDLFQSYLVDLQKKERAKAQEEQRQYRLEYRQFLETCGLIKVDTQWRKVQDRLEDDERCSRLEKFDRLEIFQEYIRDLEKEEDEQRKIKKERIKRVERKNRDEFRKMLDEHVVSGTLNAKTQWRDYCPKVKESVAYQAVATNTSGSTPKDLFEDVVEELERKYHEDKSRVKDALKLKKVAVLPTWTFEDFKAASDEDIISSLSDINLQLVFEDLIERAKEKEEKELKKRQRLVKDFTDLLYDMKEITASSTWEECHQLFEESSEYRAISDESIARESFEEYVARLVEKAKEKERKREEEKARKEEKEKRKEKERKEREKEKEKEKEKERSKKDDSDSENIDTVSEHKEDKKREKDKDRKHRKRHQDDLSSDKDERDDSKKSRRHGSDRKKSRKHTYSPESDSESKHKKHKKDSRSKNGDGDVDGQEELEDGELGEDGEIQ
Length950
PositionUnknown
OrganismArtemisia annua (Sweet wormwood)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Asteroideae> Anthemideae> Artemisiinae> Artemisia.
Aromaticity0.07
Grand average of hydropathy-1.201
Instability index57.58
Isoelectric point6.29
Molecular weight108503.27
Publications
PubMed=29703587

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20378
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     100.58|      16|      17|      49|      64|       1
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   25-   44 (18.33/ 6.13)	YsMQF..RP.GvpaQPGHpYMQP
   48-   63 (35.66/18.66)	T.QQY..RPMG...QPGQ.FSQP
   64-   80 (25.73/11.48)	M.QQMpaRP.G...QPAP.SSQP
   81-   95 (20.86/ 7.96)	MpMSY....MQ...QPPQ.YQNP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      76.17|      19|      19|     800|     818|       2
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  800-  818 (30.93/13.57)	KEKE.....RK.REEEKARKEEKEK
  820-  839 (24.81/ 9.35)	KEKE.....RKeREKEKEKEKEKER
  862-  885 (20.43/ 6.32)	REKDkdrkhRK.RHQDDLSSDKDER
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     431.55|      65|      65|     398|     462|       3
---------------------------------------------------------------------------
  398-  449 (65.51/38.11)	......................KQ.EAKAAFKSLLED.S.N.VRADWN....WEQAMRVIINDKRYGAL...KALGERKQAFNEY
  450-  517 (84.21/51.30)	LMQRKKLEAEERR........lKQrKAKEEFTKMLEE.SkE.LTSSMR....WSKAIALFEDDERYKAV...DRSSDREDLFQSY
  518-  584 (78.64/47.37)	LVDLQKKERAKAQ.......eeQR.QYRLEYRQFLET.C.GlIKVDTQ....WRKVQDRLEDDERCSRL...EKF.DRLEIFQEY
  585-  665 (72.42/42.99)	IRDLEKEEDEQRKikkerikrvER.KNRDEFRKMLDE.H.V.VSGTLNaktqWRDYCPKVKESVAYQAVatnTSGSTPKDLFEDV
  666-  723 (51.17/27.99)	......VEELERK.....yhedKS.RVKDALK..LKK.V.A.VLPTWT....FED.FKAASDEDIISSL...SDI.NLQLVF.ED
  724-  791 (79.60/48.05)	LIERAK.EKEEKE......lkkRQ.RLVKDFTDLLYDmK.E.ITASST....WEECHQLFEESSEYRAI...SDESIARESFEEY
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     149.91|      39|      40|     184|     222|       4
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  184-  222 (78.84/52.98)	WQEFTAADGRRYYYNKRTKQSSWEKPMELMTPLERA..DAS
  225-  265 (71.07/46.96)	WKEFTTAEGKKYYYNKDTKQSKWTIPEELKLAREQAekEAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     107.02|      21|      21|     294|     314|       5
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  146-  170 (30.17/18.15)	N.QGPGNVTPVSQP..GQQPsttaPTNQ
  293-  313 (36.98/24.18)	S.SSPVAVMPVIPV..GSAP....PSVA
  314-  336 (19.49/ 8.68)	SeSSSLA.SPLIPAvgGSSM....VSAS
  337-  357 (20.37/ 9.46)	MhSSPLGKTEKSSS..HGAP....EAV.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.25|      16|      17|     896|     911|       6
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  896-  911 (27.42/12.88)	SDRKKSRKHTYSPESD
  914-  929 (29.82/14.67)	SKHKKHKKDSRSKNGD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20378 with Med35 domain of Kingdom Viridiplantae
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