<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20375

Description Phytochrome and flowering time regulatory protein (PFT1)
SequenceMAADKKQLILCVEGTAALGPYWRTILSDYLDKVIRSFCDNETLKSPGTIVELALIVFNSHGCYSSCLVRRSGWTRNVDYFFEWLSAIHFSGGGFCDAAIAEGLGEALMMFPVNAAQNQHNIGVQRHCILVAASNPYPLPTPVYRPPIQKTEPTDNTEAQSESRLSDAETIAKTFPQCPVSLSVICPKQLPKLKAIYNAGKRNPSAGEPTIDVVKNPHYLVLISETFMEARAALSRSGITTLPSQSPIKVDQSSVPPVSGPPPTSVPPVNGSMMNRQPVPVGSVPPTTVKVEPTTVPSMPPAPVPVPAPSFQHVPPVARPTSQGIPTMQTSSPLSVSQDMLSNNDTVMQDMKPNVTGMQQPARPAGPVNVSILNNLSQARLMNNGTSMGIPSIGGNPMAMHMSNMISSGMASTVPVSQTVISSGQPGIAPISGTVQSTVPVPSSFTSTTSNMTGSPSQPLGNLQGSVGMGQPVSGISQGNLPGTGPQMVQSGMGMNQNMMGGVGQGQSGMTGVGTGTGTGSGPGMMPTPGIGQQVPGMQTLGVNNNTAANAGLSQQTSGGGALQSAQSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASESLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQISGQQQPQQLQPQQHPGQMQPQQQQMQHMQQQQQQIPPLQQQQQQMQQPSQQPMQQQPMQQQPMQQQQQPQQPMQQQQQQPQMVGTGMNQGYVQGPGGRTQMVPQGQVSSQGPQSMSGGSFIN
Length813
PositionUnknown
OrganismArtemisia annua (Sweet wormwood)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Asteroideae> Anthemideae> Artemisiinae> Artemisia.
Aromaticity0.04
Grand average of hydropathy-0.360
Instability index60.39
Isoelectric point8.99
Molecular weight86574.75
Publications
PubMed=29703587

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20375
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.35|      14|      16|     490|     505|       2
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  493-  509 (15.93/ 6.91)	GMNQnmMGGVGQGqSGM
  748-  761 (25.42/ 7.08)	PMQQ..QPMQQQQ.QPQ
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.01|      19|      34|     701|     734|       3
---------------------------------------------------------------------------
  691-  710 (33.72/ 9.43)	ISGQQQPQQ..lQPQQHPGQMQ
  726-  747 (29.29/ 7.04)	IPPLQQQQQqmqQPSQQPMQQQ
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     203.17|      50|      56|     239|     289|       4
---------------------------------------------------------------------------
  239-  274 (61.13/21.59)	..........................TTLP.SQSPIKVDQSSV...........PPVSG......PPPT..SVPPVNGSMMN
  275-  316 (47.31/17.86)	RQPVP.VGSvPPTTVK.......vepTTVP.SMPPA...................PVPV......PAPSfqHVPPV......
  317-  373 (42.60/12.58)	..ARP........TSQ........giPTMQ.TSSPLSVSQDMLsnndtvmqdmkPNVTG....mqQPAR..PAGPVNVSILN
  386-  451 (52.12/17.31)	SMGIPsIGG.NPMAMHmsnmissgmaSTVPvSQTVISSGQPGI...........APISGtvqstvPVPS..SFTSTTSNM..
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      72.92|      15|      16|     772|     786|       5
---------------------------------------------------------------------------
  513-  527 (24.59/ 7.98)	GTGTGTGSGP....GMMPT
  777-  795 (24.81/ 8.13)	GMNQGYVQGPggrtQMVPQ
  796-  808 (23.52/ 7.26)	G..QVSSQGP....QSMSG
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.70|      17|      56|      37|      57|       6
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   37-   57 (26.03/28.55)	FCDNETLKSPGTivelALIVF
   94-  110 (31.68/22.60)	FCDAAIAEGLGE....ALMMF
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.11|      21|      55|     130|     153|      10
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  130-  153 (33.32/26.38)	VAAsnPYPLP..TPVY....RPPiQKTEPT
  183-  209 (30.79/14.41)	VIC..PKQLPklKAIYnagkRNP.SAGEPT
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20375 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ALSRSGITTLPSQSPIKVDQSSVPPVSGPPPTSVPPVNGSMMNRQPVPVGSVPPTTVKVEPTTVPSMPPAPVPVPAPSFQHVPPVARPTSQGIPTMQTSSPLSVSQDMLSNNDTVMQDMKPNVTGMQQPARPAGPVNVSILNNLSQARLMNNGTSMGIPSIGGNPMAMHMSNMISSGMASTVPVSQTVISSGQPGIAPISGTVQSTVPVPSSFTSTTSNMTGSPSQPLGNLQGSVGMGQPVSGISQGNLPGTGPQMVQSGMGMNQNMMGGVGQGQSGMTGVGTGTGTGSGPGMMPTPGIGQQVPGMQTLGVNNNTAANAGLSQQTSGGG
2) QISGQQQPQQLQPQQHPGQMQPQQQQMQHMQQQQQQIPPLQQQQQQMQQPSQQPMQQQPMQQQPMQQQQQPQQPMQQQQQQPQMVGTGMNQGYVQGPGGRTQMVPQGQVSSQGPQSMSGGSFIN
232
690
560
813










Molecular Recognition Features






MoRF SequenceStartStop




NANANA