<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20362

Description REF4-related 1
SequenceMNNNNMSLLWDTVLNDLESKGNDPMIWAMHLSSKLTCNGVILPSPDLAHVLVNHICWENNNPVSWKFLEKALLFNLVPPLLLLALLANRVIPKRQTQPAAFRLYMELLKRHAFKLKSHVEFKNYEVIMNSIDNVLHLSQIFGIKVNDPGSLLLQFVFSTVWQLVEAALGDEGLLELTEERKFRWNVPQDMELDGPGSYNGKRNEYQEILQSRNTMMAVELIGLFLQNKVTSRILFLARRNMPTHWSSFIQDIEVLAVNSSSLRNSKVMTPENLLQLISDDRKDMSKDNKTSYLQESHSAMSSSAGLSHKVSGSCLWIPIDLVLEDAMDGTQVDTTSSIEIVTRHVKALQALNGTTWHESFLGLWVAALRLVQRERDPIEGPMPRLDTRLSMLLSITTLVVSDLIEDEENMPQNKMDSQTAQDCKEKRRMDLVSSLQSLGDYESLLTPPPSVIPAANQAAAKAMLFTSGISVGSSAYFDLVNMKDVAINFSGNLHHLIVEACIARNLLDTSAYFWPGYVTGRINQMPHGVSTQVPGWSTFMKGAPLTPVMVNALVSEPASSLGELEKVFEIALKGSDDEKIAAASILCGASFIEGWNVQEHSMYFMTRLLSPPLPANYSGNESHLIAYGPMLNVLLVAIAPVDCVQIFSLHGLVPQLAGSLMPICEVFGSCAPNKSWTLPTGEEISTHAVFSNAFALLLKLWRFNHPPLEYGVGDVPPVGAQLTPEYLLLVRNSQLVSPYKDRNSQRLSEVAKISCPDHIFVDSFPKLKAWYRQHQACLASTVSGLVHSPVHQIVDTLLTMMFRKINRNQPLNSVSGSSSSSGPGSEDMSLRPKLPAWDILEAVPFVVDAALTACAHGRLSPRELCTGLKDLADFLPASLAIIVSYFSAEVSRGVWTHVNMNGTDWPSPAANLANVEEHIRNILAATNVNVPRLFAGISSPFTLPLPLAAFVSLTITYKLDKASQRFLNLAGPALEALAAGCPWPCMIVVASLWTQKAKKWSDFLCFSSSRTVFLHDNNAVAQLLKSCFTATLGLNNSLVSTHGGVGALLGHGFGSNLYGEINPVAPGFLYLRMYRSIRDIMFLRDDILSILMQCVKDIACNGKSLKGKQASLATSLTKVKLAAQLAASILWISGGQGLVQSLINETLPSWFISTHIMDSNENTPTGAVSMLSGYALGYFTVLCGAFAWSVDSSSSVSKWRSKFLGSHMEFLASALNGKITLGCDSVTWHSYVTAFVNLMLGCMPNWVGEVNIEILKRLSHGLRQWNEEELAVMLLEAGGLGTMGAAVELVCQTDS
Length1295
PositionTail
OrganismArtemisia annua (Sweet wormwood)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Asteroideae> Anthemideae> Artemisiinae> Artemisia.
Aromaticity0.08
Grand average of hydropathy0.101
Instability index45.51
Isoelectric point6.10
Molecular weight142253.55
Publications
PubMed=29703587

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20362
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.74|      22|      93|    1128|    1150|       1
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 1128- 1150 (36.25/26.48)	SILWISGGQGLVQsLINETLPSW
 1225- 1246 (44.49/28.28)	SVTWHSYVTAFVN.LMLGCMPNW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     345.51|      78|      97|     543|     620|       3
---------------------------------------------------------------------------
  431-  492 (78.29/57.68)	................LVS.SLQSLGDYESLL.TPPPSVI....PAANQAAAKAML.....F..TSGISVGS.SAYFdLVNM..KDVAINFS.GN
  543-  620 (135.32/106.75)	APLTP...VMV...NALVSEPASSLGELEKVF.EIALKGS....DDEKIAAASILCG..ASF..IEGWNVQEHSMYF.MTRLLSPPLPANYS.GN
  639-  714 (82.53/61.33)	APVDC...VQIfslHGLVPQLAGSLMPICEVFgSCAPNKSwtlpTGEEISTHAVFSNafALL..LKLW............RFNHPPL..EYGvGD
  720-  775 (49.35/32.79)	AQLTPeylLLV..rNSQLVSPYKDRNS.QRLS.EVA...........KISCPDHIFV..DSFpkLKAWYRQHQ......................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     206.06|      66|      97|     832|     905|       4
---------------------------------------------------------------------------
  832-  905 (97.22/78.42)	PKLPAwDIleAVPFVVDAALTACAHGRLSPR..ELCTGLKDLADflPA..SLAIIVSYFSAEVSRGVWTHvnmNGTDW
  931- 1000 (108.84/62.86)	PRLFA.GI..SSPFTLPLPLAAFVSLTITYKldKASQRFLNLAG..PAleALAAGCPWPCMIVVASLWTQ...KAKKW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.25|      31|     862|     322|     353|       7
---------------------------------------------------------------------------
  322-  353 (48.25/37.63)	VLEDAMdGTQVDTTSSI.....EIVTRHVKAL.QALNG
 1181- 1217 (45.99/30.42)	VLCGAF.AWSVDSSSSVskwrsKFLGSHMEFLaSALNG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20362 with Med33 domain of Kingdom Viridiplantae
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