<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20356

Description "Zinc finger, RING/FYVE/PHD-type"
SequenceMQQHKKERMGKLPATQANPDVVRAYRREERYQMQKLLLDYISLCSRSKVKACVVTTENDQVRKGIVDLLNEYGVQKLVMGAVPENWMTVKKGSSKSSYAAKNAPPFCHIWFVNNSQLLYTREPAEDYDSLPPLIPQASNALRSQSLRYPNTQRELQQIYSRSSSSINLIGGSTSMTRSTKQFHGDGLHNNLQSNTSSDSGYSSSTELDSRLEEESLSKQLEEVNIEAEASRNQAFQELLKRKRLEALAIEANNKVEFHLYKLTSKVKVYESAHAQEVELRKAAEDTLNTARVEHKQLMQQKELASKELHKAMRNIALSRNQVQEANRRREESSEELKLIEASITTLKIEQQAVQRQRLEASDWLERWKIRGQAGGVSSTTPRLMEFTLLDLETATCGFSDSFKISCESDGVSFYKGEMLKRTVMIKKLHPNNLQAQSEFQQEYQVVGRLQHKHILSLVGICQEAYALVYEYTPWSLESHLSSKTNSTCWKTRTRVISEIANALLFLHTFRPEKISHGNLKPENIVLDSELSCKLCNFRFSSFVNEETFRCRSFRQYAEQNGPFSFTDPEVVQTGTLTAKSDIYSFGMIILWLLTGSQSAGLVNEVRKAVLGSSLVSVLDASAGEWPIFVAKRLADFGLRCCESNTRDRPMISPILVKELQQLSFLEDRQVPSFFLCPILKEIMYDPQLAADGFTYEGEALRGWLKNGNETSPMTNLKLSHLDLIPNHSIRVAIQDWLCNPSSM
Length743
PositionTail
OrganismArtemisia annua (Sweet wormwood)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Asteroideae> Anthemideae> Artemisiinae> Artemisia.
Aromaticity0.08
Grand average of hydropathy-0.473
Instability index53.26
Isoelectric point8.23
Molecular weight84480.04
Publications
PubMed=29703587

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20356
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     120.78|      30|      89|     217|     251|       1
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  217-  245 (41.55/21.99)	......................SKQLEEVN.IEAEASRNQA...FQELLKRKRLE
  251-  303 (20.07/13.72)	AnnkvefhlykltskvkvyesaHAQEVELR.KAAEDTLNTArveHKQLMQQKEL.
  304-  330 (33.77/13.46)	A.....................SKELHKAM.RNIALSRNQV....QEANRRRE..
  334-  359 (25.39/10.29)	..........................EELKlIEASITTLKI...EQQAVQRQRLE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     153.45|      48|      89|     376|     439|       2
---------------------------------------------------------------------------
  376-  439 (74.64/68.59)	VSSTTPRLMEFTLLDLETATCG...............FSDSFKISCESDGvsfykgemlkrtvmikKLHPNNLQAQSEF
  468-  530 (78.81/45.17)	VYEYTPWSLESHLSSKTNSTCWktrtrviseianallFLHTFRPEKISHG................NLKPENIVLDSEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     146.12|      42|     110|     562|     603|       3
---------------------------------------------------------------------------
  562-  603 (72.81/46.68)	PFSFTDP...EVVQTGTLTAKSDIYSFGMIILWLLTGSQSAGLVN
  671-  715 (73.30/47.03)	PSFFLCPilkEIMYDPQLAADGFTYEGEALRGWLKNGNETSPMTN
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20356 with Med32 domain of Kingdom Viridiplantae
Unable to open file!