<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20353

Description Uncharacterized protein
SequenceMDNTELLSKNIDTSINNVYCIKEYIQDFKTELSSIKELPKDNATFNRAYLKLLQLNKSLSILKDSYLESKEAKRPAVDSTHVVRYNDILYHLLPKLNSNAFEKCISGTALFKFLKDYRSSSPKVEIFVETFRNNSKMIIKFQLNKAICLNVYFSEAEKLEPQMVEFNGFNNNQTNLQDKKLHFQYKIDSFQVSKFRVAGIDKYSPTSSNLYDIKDNSIFDIIQSQLTFKWNSSFIENKSYTQSFFDLMMWFESYKTIFTKPCDYCNKILKFEGVIGIWAPPVIRVENTMQARQSDPFNNRSNTNITYSAYHLSFRYNDILYHLLPKLNSNAFEKCISGTALFKFLKDYRSSSPKVEIFVETFRNNSKMIIKFQLNKAICLNVYFSEAEKLEPQMVEFNGFNNNQTNLQDKKLHFQYKIDSFQVSKFRVAGIDKYSPTSSNLYDIKDNSIFDIIQSQLTFKWNSSFIENKSYTQSFFDLMMWFESYKTIFTKPCDYCNKILKFEGVIGIWAPPVIRVENTMQARQSDPFNNRSNTNITYSAYHFSCA
Length546
PositionTail
OrganismSmittium simulii
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Zoopagomycota> Kickxellomycotina> Harpellomycetes> Harpellales> Legeriomycetaceae> Smittium.
Aromaticity0.15
Grand average of hydropathy-0.423
Instability index41.88
Isoelectric point8.94
Molecular weight64047.30
Publications
PubMed=29764946

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20353
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     220.79|      51|     127|     126|     176|       1
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  126-  176 (110.40/61.40)	IFVETFRNNSKMIIKFQLNKAICLNVYFSEAEKLEPQMVEFNGFNNNQTNL
  357-  407 (110.40/61.40)	IFVETFRNNSKMIIKFQLNKAICLNVYFSEAEKLEPQMVEFNGFNNNQTNL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     137.86|      33|     131|      87|     119|       2
---------------------------------------------------------------------------
   87-  103 (23.57/ 8.42)	....................................................................................................................DILY.HLLPKLNSNAFEK
  104-  119 (24.64/ 9.07)	CISGTALFKFLKDYRS......................................................................................................................
  220-  237 (20.71/ 6.68)	................sspkveifvetfrnnskmiikfqlnkaiclnvyfseaeklepqmvefngfnnnqtnlqdkklhfqykidsfqvskfrvagidkysptssnlydikdnsifDIIQsQLTFKWNSSFIEN
  318-  334 (23.57/ 8.42)	....................................................................................................................DILY.HLLPKLNSNAFEK
  335-  350 (24.64/ 9.07)	CISGTALFKFLKDYRS......................................................................................................................
  451-  468 (20.71/ 6.68)	................sspkveifvetfrnnskmiikfqlnkaiclnvyfseaeklepqmvefngfnnnqtnlqdkklhfqykidsfqvskfrvagidkysptssnlydikdnsifDIIQsQLTFKWNSSFIEN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     513.23|     119|     228|     177|     313|       3
---------------------------------------------------------------------------
  177-  313 (256.26/138.84)	QDKKLHFQYKIDSFQVSKFRVAGIDKYSPTSSNLYDIKDNSIFdiiqsqltfkwnssfienKSYTQSFFDLMMWFESYKTIFTKPCDYCNKILKFEGVIGIWAPPVIRVENTMQARQSDPFNNRSNTNITYSAYHLS
  408-  544 (256.98/139.25)	QDKKLHFQYKIDSFQVSKFRVAGIDKYSPTSSNLYDIKDNSIFdiiqsqltfkwnssfienKSYTQSFFDLMMWFESYKTIFTKPCDYCNKILKFEGVIGIWAPPVIRVENTMQARQSDPFNNRSNTNITYSAYHFS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20353 with Med27 domain of Kingdom Fungi
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