<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20350

Description Uncharacterized protein
SequenceMQAWRERWSDVQWGIQLKRLFSVHSGESCDLAEILLQQTLVGSSPNSLLLSYLKHTVLSQIVPCSSVLNYIAAFDDLSRPYCVLALIHLAEVFGTKLSFSYGPDSSLQVCRSLLGVLHWLLLQLLKCLQTMREERPELIQVMDSASKAATGMLRRPTVTALLQVARADNTEAYREFEQSEVNLRGTLSQLPPGVIPDSTRESISTMLTLAEELPDVQVPLEPVLHAPHLPVCPTLNALVALEAVLNSNSDKISRPLLFLEIFRACFMGLVDSTTSSEELKWATFTFLKMRQIMVKIQQLNPGPDFSSDVEKGIDMLLQYRHLLDQADIKHRWDCLSQFLKECMQFNILTENQMNLLKQKRQIQREQLRPGDLTTSTTSSVGLIARAETTVISILKTLDADHQKNQDPLVGVLSQMLSGRSFEIITSAAASMGELKNFTMKLIRTNEFARVGPADTSKTSQTRAQLFDITFLMLCHIIQLHGMEIVTGHKEASESFIVQWAQRWLPEDGKYRSLDTTAVPQDQSKVDSLLMQFMSGDPRTNVQRWHELCINTPFAVQEVLFAWEHKALAKEKVMAVMDSIKSRMSCLSVVTCVWLCSYMNVVGTDARQKPLAMLEHLTRVKIEQATSTESRSHLMHMVMERIMNDVLPGSHPQRTCAHMYVSTDVLPIVTLHKTLTDAFQRGWLGLSSIHTLEQLLALCGSDWFCEKVVMQMLEWNKAEELSQALSLVLAIFHMDLEHLTHSMLLRLMPRLLLSTVHTHMLTDPRGFTLAKLCVLCITGTQTSKIGQKEPYVRRSRKRSKIDAELEDIDDSDIRPGKVRKLHEPQLTLNLEGFNLDDISAKEDGESSPNFDSKDPMNKALINLFLLMNAIIHDPSLTPRTTFIISFIEEAIKCGAQYARFILQFMPPTMLPQLMKTMPGVFSNAQILQICDLTMLTGRKVAAKAISSNSRFMDKTASV
Length957
PositionTail
OrganismPomacea canaliculata (Golden apple snail)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Mollusca> Gastropoda> Caenogastropoda> Architaenioglossa> Ampullarioidea> Ampullariidae> Pomacea.
Aromaticity0.06
Grand average of hydropathy-0.046
Instability index45.65
Isoelectric point6.49
Molecular weight107956.34
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20350
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.50|      25|      75|     323|     349|       2
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  323-  349 (39.24/39.58)	LDqADIKHRWD....CLSQFLKEcMQFNILT
  397-  425 (39.25/27.17)	LD.ADHQKNQDplvgVLSQMLSG.RSFEIIT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     368.43|     101|     106|      95|     197|       3
---------------------------------------------------------------------------
   48-  119 (107.61/74.19)	LLLSYLK..HTVLSQIVPCSSVLNYI...AAFDDLSRPyCVLALIHLA...........................................E....vfgTKLSFSYG.PDSSLQVCRSLLGVLHW
  120-  226 (148.85/111.98)	LLLQLLKCLQTMREERPELIQVMDSAS.KAATGMLRRP.TVTALLQVARA......DNTEAYREFEQSE...VNLRG...TLSQLPPGviPDstresisTMLTLAEElPD..VQV..PLEPVLHA
  227-  322 (111.97/77.54)	PHLPVCPTLNAL....VALEAVLNSNSdK.....ISRP.LL..FLEIFRAcfmglvDSTTSSEELKWATftfLKMRQimvKIQQLNPG..PD.......FSSDVEKG.IDMLLQ.YRHL......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     290.62|      83|     334|     435|     537|       4
---------------------------------------------------------------------------
  435-  498 (92.61/57.93)	..................................KNFTMKLIRTNEFARVGPADTSK.......TSQTRAQ.LFDITFLMLCHIIQLHGMEIVTGHKEASESFIVQ
  517-  610 (83.98/93.31)	AVPQDQSKVDslLMQFMSGDPrtnvqrwhelcinTPFAVQEV...LFAWEHKALAKEkvmavmdSIKSRMScLSVVTCVWLCSYMN......VVGTDARQKPL...
  611-  681 (114.04/72.25)	AMLEHLTRVK..IEQATSTES.............RSHLMHMVMERIMNDVLPG..SH.......PQRTCAH.MY..........VSTDVLPIVTLHKTLTDAFQRG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20350 with Med24 domain of Kingdom Metazoa
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