<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20346

Description Uncharacterized protein
SequenceMDGGHGLRQPMSPAISASAVVPQQRQMQLHHHPARPAIADLFTLYLGINSKQRPEDPSRESSNKLQKRVTALNRDLPPRDEQFISDYEQLRMQFPDQEQLQAVTESVLISFVLQCSSHAPQSEFLLFATRCLCARGHLRWDTLLPSLLNAVSSMEAPVGQGVPVTSGGPVTPSSSAITMPNAPNFHPSNPASPLSVMNTIGSPTQSGIDQPVGANVSPIKAAEFSSSAQLGTAARGDQSRRGAEISYLHHLSCRILLAGLESNLKPATHAVIFQHMVNWLVNWDQRPHNMDEADAMQTWRLEKPLHEWMHLCLDVIWILVNEEKCRIPFYELVRCNLQFLENIPDDEALVSIIMEIHRRRDMVCMHMQMLDQHLHCPTFATHRFLSQSYPSIAGESVTNLRYSPITYPSVLGEPLHGEDLANSIPKGGLDWERALRCLRHALRTTPSPDWWRRVLLVAPCYRSQSQQSSTPGAVFSPDMIGEAVADRTIELLRLTNSETQCWQDWLLFADIFFFLMKSGCIDFLDFVDKLASRVTNSNQQVLRSNHVTWLLAQIIRIEIVMNTLSSDPRKVETTRKIISFHKEDKTLDANNIGPQSILLDFISSSQTLRIWSFNTSIREHLNSDQLQKGKQIDEWWKQMTKASGERMIDFTNLDERATGMFWVLSFTMAQPACEAIMNWFTSAGMADLIQGPNMQPNERIMMMRETYPLSMSLLSGLSINLCLKLAFQLEETIFLGQAVPSIAMVETYVRLLLITPHSLFRPHFTTLTQRSPSILSKSGVSLLLLEILNYRLLPLYRYHGKSKALMYDVTKIISMIKGKRGEHRLFRLAENLCMNLILSLKDFFFVKKELKGPTEFTETLNRITIISLAITIKTRGIAEVEHMIYLQPLLEQIMATSQHTWSEKTLRYFPPLIRDFLMGRMDKRGQAIQAWQQAETTVINQCNQLLSPSAEPNYVMTYLSHSFPQHRQYLCAGAWMLMNGHLEINSANLARVLREFSPEEVTANIYTMVDVLLHHIQFEVQRGHLAQDLLSKAITNLSFFIWTHELLPLDILLLALIDRDDDPYALRLVISLLEKPELQQRVKAFCSSRSPEHWLKNQHPKRVELQKALGNHLSWKDRYPPFFDDIAARLLPVIPLIIYRLIENDATDIADRVLAFYSSLLAFHPLRFTFVRDILAYFYGHLPIKLIGRILNLLGVSTKTPFSESFAKYLVSSNSSVCPPPEYFANLLLNLVNNVIPPLSSKSKSNPADTTRSTFNKHHASSQPGGIGNNDGQRAFYQNQDPGSYTQLVLETAAIEILSLPVSAAQIVSSLVQIIAHVQAMLIQSNSGQGMSGGLGQSSGLPTSPSGGGAEPAGSNQTNSAASGINATNFVSRSGYSSQQLSVFMIQACGLLLAQLPPEFHMQLYSEAARVIKDCWWLADSSRPVKELDSAVGYALLDPTWASQDNTSTAIGNIVALLHSFFSNLPQEWLESTHTVIKHLRPVNSVAMLRIAFRILGPLLPRLAFARPLFMKTLALLFNVLGDVFGKNSQVSNPVDASEITDIIDFLHHAVMYEGQGGPVQSTSKPKLEILTLCGKVIEILRPDVQHLLSHLKTDPNCSIYAATHPKLVQNTS
Length1613
PositionTail
OrganismPanicum hallii var. hallii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum> Panicum sect. Panicum.
Aromaticity0.08
Grand average of hydropathy-0.092
Instability index46.75
Isoelectric point6.93
Molecular weight181186.55
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20346
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     124.06|      47|     183|     287|     341|       1
---------------------------------------------------------------------------
  288-  318 (50.29/29.91)	.....................HNMDE.ADAMQTWRLEKPLHEWMHLCLDVIWI
  321-  340 ( 3.96/12.52)	NEEKCRIpFYELVRcnlQFL.................................
  902-  931 (32.55/12.87)	SEKTLRY.FPPLIR...DFLmGRMDKrGQAIQAW...................
 1552- 1580 (37.28/17.69)	.......................MYE.GQGGPVQSTSKPKLEILTLCGKVIEI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      32.57|      13|      19|    1149|    1167|       2
---------------------------------------------------------------------------
 1156- 1175 (12.88/17.60)	FYSSLlafhPLRftfVRD.IL
 1178- 1191 (19.68/11.80)	FYGHL....PIK...LIGrIL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.96|      17|      17|    1204|    1220|       3
---------------------------------------------------------------------------
 1204- 1220 (31.40/16.86)	ESFAKYLVSSNSSVCPP
 1222- 1238 (30.56/16.24)	EYFANLLLNLVNNVIPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.16|      25|     183|      10|      84|       4
---------------------------------------------------------------------------
   19-   44 (41.53/26.34)	AVVPQQRQMQLHHHPARpAIADLFTL
 1394- 1418 (49.63/29.10)	AQLPPEFHMQLYSEAAR.VIKDCWWL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     144.84|      43|     232|     160|     209|       5
---------------------------------------------------------------------------
  160-  209 (71.28/55.34)	QGVPVTSGGPVTP.SSSAITmpnapnfHPSNPASPLSVMNTIGSPTQSGID
  387-  430 (73.56/41.90)	QSYPSIAGESVTNlRYSPIT.......YPSVLGEPLHGEDLANSIPKGGLD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     128.33|      28|     633|     358|     385|       6
---------------------------------------------------------------------------
  358-  385 (52.52/36.31)	RRRDMVCMHMQML.DQHLHCPTFATHRFL
  965-  993 (41.36/26.88)	QHRQYLCAGAWMLmNGHLEINSANLARVL
  997- 1022 (34.45/21.03)	SPEEVTANIYTMV.DVLLHHIQFEVQR..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.66|      18|      22|     431|     448|      13
---------------------------------------------------------------------------
  431-  448 (34.54/21.22)	WERAL...RCLRHALRTTPSP
  451-  471 (30.12/17.50)	WRRVLlvaPCYRSQSQQSSTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.54|      23|     633|     790|     851|      15
---------------------------------------------------------------------------
  827-  850 (35.54/83.35)	RLAENLCMNLILSLkDFFFVKKEL
 1024- 1046 (41.00/ 6.35)	HLAQDLLSKAITNL.SFFIWTHEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.81|      22|     336|    1104|    1141|      18
---------------------------------------------------------------------------
  137-  158 (38.43/14.68)	HLRWDTLLPSLLNAVSSMEAPV
 1112- 1133 (41.38/32.29)	HLSWKDRYPPFFDDIAARLLPV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20346 with Med23 domain of Kingdom Viridiplantae
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