<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20345

Description Uncharacterized protein
SequenceMEGEHEEWEPLSSARGSPATSWAGSLADELDEQSPPAGAGDVAVFVAVPEEVSDGRSTLLWALRNLVRDGSKVVIAHVHSPAQLRDQASINPEEIKEYRKLMRAKAEKNLDAYVLIAKCTREDIEVGCEKIIIETDNVAKGLEELVTLHNVTELVMGAAADRHFSKEMNTPKSMTALRLMETAAPSCKIWFTCKGHLICTREATESLPAIPPSPAQNAQEAPEYIISSQMGSMALTELEYEVSSSKGYTSSSLVATEMTDWDYLFGDWGMIVYGSSRLDDAANFSGTATLPPMIGDTNEPTPVVHPPTQESGNVYLLLASEYNQEDQPSVDEEMYEKLQDLCIEAKLLKDPADNESNKIRRTEMDLHSALQRIKESEDSYLQEVSQRKEIEKTLTRQRLQIDKMRRQQCTLSDELQDSKKHNLMLEQRITQIKSAAKDHVEEITKYFIKQSCEESKKRQKIEMDLLSTLQRVKEMESLLQNEKAQREYMEKKVARQRTEIEETKRQRDKLYYDLQNVKEKRHRLEQVDASEETNRRRKAEKDLISYLQRIKDLEHQQIHQLKEKERMEETMARQKDEIQAAKKELHEIHSKHMIEIKSTVNIHEKKLANSKQLLQELQAKYEKLLHERDAAVTEAKELRQKNKQRASMITETPDTEFSFAELQKATNGFDEEFKICEDEFASIYKGFIRNTNVAIKLFHPRSLKGQAKFYQEVAVLSRVRHPNLITLIGACPDDFALVYEFLPNGTLEDWLSCKKNMPPLTWKVRTRIIGEICSALAFIHSYKPYPIVHGDLNLGNILLDANFVSKLGDLGISHLHRQPDLPTTNLQCHPTKNHKGTLCYMDNGEFKTARELMLWSDVNSFGIIILRLLTGRSQQQIGEIVEEAMEKGNLHSIIDTSAGDWPFTQVNQMAHLGLRCITLSWGRQPELAREVWVVVEQLMKAACLTTGPSRFASPSDAPPPSHFICPIFQEVMSDPHMAEDGFTYEAEAIRGWLAGADTSPMTNLRLASRKLTPNKALRSAILEWQQQQQQHQR
Length1033
PositionTail
OrganismPanicum hallii var. hallii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum> Panicum sect. Panicum.
Aromaticity0.06
Grand average of hydropathy-0.590
Instability index52.58
Isoelectric point5.73
Molecular weight117766.51
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



ECO:0000256	ARBA:ARBA00003861

GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20345
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     345.95|      54|      77|     453|     506|       1
---------------------------------------------------------------------------
  354-  407 (78.37/53.83)	NESNKIRRTEMDLHSALQRIKESEdS..YLQ.EVSQRKEIEKTLTRQRLQIDKMR..RQ
  410-  452 (46.87/28.94)	TLSDELQDSKKHNLMLEQRITQIK.S.....AAKDHVEEITKYFIKQSC..........
  453-  506 (88.12/61.53)	EESKKRQKIEMDLLSTLQRVKEME.S..LLQNEKAQREYMEKKVARQRTEIEETK..RQ
  531-  584 (77.67/53.27)	EETNRRRKAEKDLISYLQRIKDLE.H..QQIHQLKEKERMEETMARQKDEIQAAK..KE
  586-  640 (54.92/35.30)	HEIHSKHMIEIKSTVNIHEKKLAN.SkqLLQELQAK..Y.EKLLHERDAAVTEAKelRQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     200.54|      64|      77|     136|     212|       2
---------------------------------------------------------------------------
  119-  198 (97.24/84.71)	CTREDIEvgcekiiietDNVAKGLEELVTLHnvtelvMGAAADRHFSKEMNTPKSMTALRLMETAAPSCKIWFTCKGHLI
  199-  272 (103.30/90.56)	CTREATEslpaippspaQNAQEAPEYIISSQ......MGSMALTELEYEVSSSKGYTSSSLVATEMTDWDYLFGDWGMIV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      26.61|       8|      20|     659|     669|       4
---------------------------------------------------------------------------
  659-  669 (10.45/18.19)	FAELQKatnGF
  680-  687 (16.16/12.14)	FASIYK...GF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20345 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MEGEHEEWEPLSSARGSPATSWAGSLADELDEQS
2) QIHQLKEKERMEETMARQKDEIQAAKKELHEIHS
1
557
34
590










Molecular Recognition Features






MoRF SequenceStartStop




NANANA