<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20343

Description Uncharacterized protein
SequenceMEDGSKLVIVHVHSPAQEIAKVRNHTSMKPEEIKKYIKLKREKADKNLDAFVQIAKCTREDLQVDCETVIIEMDNVATGLVKLISLHSITKLVMGAAADQHYSREMNTPKSLTALKLMETAAPSCKIWFTCKGHLICTREENENLPAIPPSPEESNVPLLPAGSISNQMRSMALPELEYEVSSSKGCTSSSLVATEMATWDYFFGDWGMRVYGSSKTEDLVTDGTNELTPVKHSLTHESGNVYFLRASASNQEDKPSVDVEMCDNLQHLCNEAKLVDDEPDEESKKLHKAETDLLSALQRIKELEGSYLHEVGQREETEKMFSKQRLETDELRRQSYTLSDELQDSNKHKLILQQRTNQIKSSAKDHVEEITKHFLKQSHEESKKHRKIEMDLLSTLQRVKEIESLFQNERAQRKEMEEKVARQRTEIEETKRERDKLYYDLHDVKEQKLQLQVTDASKEIDRRRKAERDLLSALQRIKDLEHQHIHEVEKRDEMEEIVARQEEEIKATKRQLQGIHDRIMTEMKSAVKVHEEKLADTKQFLQELQSKYEKLLHDRDAAVAEAKELRQKNKQRGSMTNETLNTEFSLAELQQATKGFDAEFKISDDGFASIYKGFLRNTTVAIKLFHPQSLTGQAKFHREVAVLSRVRHPNLITLIGACPNHFTLVYEFLPNGSLEDRLSCKKNMPSLTWKVRTRIIGEICSALAFIHSQKPYPIVHGDLNLANILLDANFVSKLGDLGICQFLSQSNITTINQQRHPTNHRGTLCYMDSDEFQSACELMLWSDVHSFGIIILRLLTGRSQHRIAAIVEEAMEKGNLHSIMDTSAGDWPLVQAKQLAHLGLRCITMSGGRQPDLGGEAWEVIEVLMRDACLTAGPSEFASSSNDDSTPSCFICPIFQEVMNDPYIAADGFTYEATAIKEWLDSGADTSPMTNLRLAHRGLTPNRALRSAILEWQQHWK
Length958
PositionTail
OrganismPanicum hallii var. hallii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum> Panicum sect. Panicum.
Aromaticity0.06
Grand average of hydropathy-0.570
Instability index48.84
Isoelectric point5.94
Molecular weight109124.70
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20343
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      85.96|      13|      47|     381|     393|       1
---------------------------------------------------------------------------
  282-  294 (22.49/14.24)	EESKKLH.KAETDL
  381-  393 (24.05/15.81)	EESKKHR.KIEMDL
  429-  442 (18.10/ 9.86)	EETKRERdKLYYDL
  459-  471 (21.32/13.08)	KEIDRRR.KAERDL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     255.47|      49|     174|     295|     343|       2
---------------------------------------------------------------------------
  295-  343 (81.70/52.37)	LSALQRIKELEGSYLHEVGQREETEKMFSKQRLET..............DELRRQSYTL.....SDEL
  351-  380 (40.24/21.88)	LILQQRTNQIKSSAKDHV...EEITKHFLKQ.................................SH..
  394-  458 (53.16/31.38)	LSTLQRVKEIESLFQNERAQRKEMEEKVARQRTEIeetkrerdklyydlHDVKEQKLQLqvtdaS...
  472-  520 (80.37/51.39)	LSALQRIKDLEHQHIHEVEKRDEMEEIVARQEEEI..............KATKRQLQGI.....HDRI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     277.60|      65|      73|      81|     145|       3
---------------------------------------------------------------------------
    6-   69 (74.24/62.36)	.KLviVHVHSPAQEI..AKV..RNHTSMKPEEIKKYIKLK.REKADKNLDAFVQIAK...CTREdlqvDCETV
   81-  145 (109.20/96.21)	VKL..ISLHSITKLVMGAAA..DQHYSREMNTPKSLTALKLMETAAPSCKIWFTCKGHLICTRE....ENENL
  157-  220 (94.17/81.66)	VPL..LPAGSISNQ.MRSMAlpELEY..EVSSSKGCTSSSLVATEMATWDYFFGDWGMRVYGSS....KTEDL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     120.30|      35|     629|     240|     278|       5
---------------------------------------------------------------------------
  240-  278 (54.04/40.14)	GNVYFlrASASNQEDKPSvdVEMCDNLQHLCNEAKLVDD
  874-  908 (66.26/37.31)	GPSEF..ASSSNDDSTPS..CFICPIFQEVMNDPYIAAD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.46|      19|      21|     615|     633|       6
---------------------------------------------------------------------------
  615-  633 (33.51/22.43)	FLRNTTVAIKLFHPQ..SLTG
  637-  657 (28.95/18.43)	FHREVAVLSRVRHPNliTLIG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20343 with Med32 domain of Kingdom Viridiplantae
Unable to open file!