<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20342

Description Uncharacterized protein
SequenceMQSAGGEAAHRRWDTSSSSQYSFRTSVSSAADITAGDEVEEASPPPVEGRVFVAVPEEARHGKSTLLWALENLAKDGAGVVVAHVHCPAQMIPMMGAKVHYTTVNPQRVNDHRKKVRAEAEEKLDEYVKMCIRKKVSCEKLIIENEDVAKGLEELISLHGITRLVMGAAADKHHSKKMKSLKSKTALRLMETAASSCKIWFTCKGHLICTREANTTVPAIPASPVFTNASNSLATSVVNHLRSVTISHSHSESEASSSNGSPRHDLIRSRTEVGLYPSLEAISTPSRLHESYGRPTSTSRSSIDSWSEFGRLQNSWSDPSRNHDAVTVSGSAMPHQMHEPDDENFSSPSHELENPGVDANIYDRLTEALSEAELYKKEAYEESTKRLRAERDMILALQKAKEIESLYQHEIKQRKTTEETLVRQAQEIEEIKTQHHAISNELQDVKEQKFALEQQINEMASVIKDHEEKMAANKHLLGVLQTDNEKLQQERDAAVAEANGLRQKNDQKMAMPLPAETLNTEFSYFELEQATQGFDEGLKIGEGGFGSVYKGFLRNTTVAIKLLNPQSMQGQSEFNQEVAVLGRVRHPNLVTLIGSCQEASGLVYEFLPNGSLEDRLACINNTPPLTWQVRTKIICEMCSALIFLHSNQPHPVVHGDLKPGNILLDANFVSKLGDFGICRLLSQSNTAMSNTTRSITTKLHRTTTPKGTFAYMDPEFLSTGELTPRSDVYSFGIIILRLLTGRPPKRIAEVVEDAMERGELHAILDPTAGSWPFVQANQLAHIGLRCAEMSRRRRPDLAGEVWKVVEPLMKAASLTAGRLSFAPSLGDAHAPSYFVCPIFQEVMSDPHIAGDGFTYEAEAIMGWLDSGHDTSPMTNLKLERCELTPNRALRSAILEWQQQLHYRT
Length904
PositionTail
OrganismPanicum hallii var. hallii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum> Panicum sect. Panicum.
Aromaticity0.06
Grand average of hydropathy-0.443
Instability index51.19
Isoelectric point6.06
Molecular weight100352.30
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20342
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     213.37|      67|     778|      30|     108|       1
---------------------------------------------------------------------------
   30-  108 (108.37/87.60)	AADITAG.....DEVEEASPPP.VEGRVFVAVPEEARhgkstllwalenLAKDG....AGVVVAHVHCPAQMIPMMGAKVHYTTVNPQR
  811-  887 (105.00/63.78)	AASLTAGrlsfaPSLGDAHAPSyFVCPIFQEVMSDPH............IAGDGftyeAEAIMGWLDSGHDTSPMTNLKLERCELTPNR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.56|      29|      32|     283|     314|       2
---------------------------------------------------------------------------
  258-  290 (47.35/31.09)	SNGSP...RHDLIRSRTEVGLYPSleaiSTPSRLHE
  291-  324 (45.21/37.80)	SYGRPtstSRSSIDSWSEFGRLQN..swSDPSRNHD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.93|      23|      27|     382|     404|       4
---------------------------------------------------------------------------
  382-  404 (34.87/25.11)	ESTKRLRAERDMILALQKAKEIE
  410-  432 (35.05/25.27)	EIKQRKTTEETLVRQAQEIEEIK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.67|      13|      15|     462|     474|       5
---------------------------------------------------------------------------
  462-  474 (20.31/14.06)	VIKDHEEKMAANK
  479-  491 (19.37/13.06)	VLQTDNEKLQQER
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20342 with Med32 domain of Kingdom Viridiplantae
Unable to open file!