<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20340

Description Uncharacterized protein
SequenceMASGGPLPTVAVAVRPGGSGSRLAARWVAAGLPDDGRAAAVALVHVIPTLSYVPSPTGERVPVALVGREPAEAYARDRRARAEEALLPFRHLNCGRANVTVETVVVEGDGVAEALLRYAHESRVRSLVLGSASFRWFRRVLSIPDVPSTVIQAPQNSCNVFVVSKRRLIMKLARHPQTSESNANLRIEAISHETFEQSHRSLLFDNFADDEAHSDAFSHAHSSHSASNVVPSSGSSEQVASEISVANAAETEGSKNYDSLSSLGEAPCATSNSSEECQSVDEVAKLRKELRDTLVVYDKACVELVNAKKKIQVLSTECSEEARKVEHALEWEEALKQTVADEKAKQLEALNQVERARRSFTREAYSRHKAEMATSLISEDRAQIVDAILSKSRTCRRYSKQDIQLATDNFSEARKIGEGGYGNVYRCTLDHTEVAVKVIQQDSIDRTDEFLKEVEILSQLRHPNLVLLIGFCPEIGCLVYEYLKNGSLEDQLFNNKGRQQLHWFLRIQIIFEVSCGLAFLHARNPEPIVHRDLKPANILLDRNYVGKIGDVGFAKLLSDLVPDWQTEYRETIVAGTLYYMDPEYQQTGTVRPKSDVFALGVIMLQLLTGRRPNGLIVSAENAVRNGRLRDILDKSQSDWPADEAEMFAKLGLKCTALKCRDRPDLESEVLPELDEILHRITSAVNLRNPKLSVPSHFICPLTQELMEDPHVAADGHTYEQYAIRAWLKRHKTSPVTRSKLPNSSIIPNHSLRAAIEQWKSQLPDQTTDP
Length769
PositionTail
OrganismPanicum hallii var. hallii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum> Panicum sect. Panicum.
Aromaticity0.06
Grand average of hydropathy-0.346
Instability index50.54
Isoelectric point6.19
Molecular weight85522.75
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20340
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.49|      30|      38|     208|     245|       1
---------------------------------------------------------------------------
  208-  245 (40.07/40.19)	ADDEAhsdafSHAHSSHSASNVVP..SSGSSEQVAseiSV
  249-  280 (47.42/26.80)	AETEG.....SKNYDSLSSLGEAPcaTSNSSEECQ...SV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.25|      24|      38|     459|     485|       2
---------------------------------------------------------------------------
  459-  485 (35.10/32.01)	QLrHPNLVLLIGFcpEIGC.LVYEYLKN
  500-  524 (41.16/24.03)	QL.HWFLRIQIIF..EVSCgLAFLHARN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.84|      11|     286|      72|      85|       4
---------------------------------------------------------------------------
   72-   85 (15.12/17.05)	EAYARDrraRAEEA
  363-  373 (20.73/12.65)	EAYSRH...KAEMA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.90|      17|      89|     308|     325|       7
---------------------------------------------------------------------------
  308-  325 (25.15/20.25)	KKKIQvLSTECSEEARKV
  400-  416 (29.75/19.11)	KQDIQ.LATDNFSEARKI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20340 with Med32 domain of Kingdom Viridiplantae
Unable to open file!