<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20338

Description Uncharacterized protein
SequenceMFASAFAVSSSYSAEQEATARDSSVIVAVDRDKNSQQAAKWAVDKLLSRGSTLTLVHVRAEGGKDEGDAEITQLFISFRGYCARKGMHLKEVILDNSDISKAIIEYATSNAITDIVVGASTKNTFIRRFRNPDVPTCLMKMAPDYCTVHVIHKVKAIQVKAAKSPAPFATLPPKQYSQPIIESDASRASRGDWKKTSHSHTSSPMASRNSVDRLSAYAKAPSRDRPFTGARTAPQKDFDDYIDFIAPPRPSVTRSSFSDDIDLAMSMELPSIDFAESMELSSAMSMESLSSAGDVEAEMRRLRLELKQTMEMYNSACKEAIDAKQKAAQMHQMKMEESKKFQELRNAEEEALALVQMEKAKCRAALEAAEAAQKIAELEAQKRLRAEWKAKREAEDRKKATDALNKNDLRYRRYSIDDIEAATHKFDKALKIGEGGYGPVYKAVLDHTNVAIKILRPDASQGRKQFQQEIEVLSCMRHPNMVLLLGACPEYGCLVYEYMDYGSLEDRLCRRGKTLPIPWSVRFRIAADIATGLLFLHQARPEPLVHRDLKPANILLDHNFVSKISDVGLARLVPQSAADVTQYRMTSTAGTFCYIDPEYQQTGMLTTKSDIYSLGIMLLQIITARSPMGLTHHVENAIERGTFQEILDQTVTDWPVEEALEFAKLALRCAELRKKDRPDLGKEILPELNRLRNLGHEYEASQVSSASTNCSSSAPYSFSNDDI
Length723
PositionTail
OrganismPanicum hallii var. hallii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum> Panicum sect. Panicum.
Aromaticity0.07
Grand average of hydropathy-0.417
Instability index48.87
Isoelectric point6.78
Molecular weight80728.02
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20338
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      71.40|      15|      17|     257|     271|       1
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  238-  251 (25.86/14.37)	FDDYIDF...IAPP.RPS
  257-  271 (29.13/17.05)	FSDDIDL..AMSME.LPS
  274-  291 (16.42/ 6.64)	FAESMELssAMSMEsLSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      69.20|      22|      22|     349|     370|       2
---------------------------------------------------------------------------
  325-  347 (20.88/12.72)	QKAAQMHQMkmeE.SKKFQELRNA.....
  349-  370 (33.14/25.15)	EEALALVQM...E.KAKCRAALEA...AE
  372-  395 (15.18/ 6.95)	..AQKIAEL...EaQKRLRAEWKAkreAE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     365.12|     115|     459|      44|     165|       3
---------------------------------------------------------------------------
   44-  165 (181.22/153.23)	DKLLSRGSTLTL.VHVRAeggKDEGDAEITQLFI.SFRGY.CARKGMHLKEVILDN...SDISKAIIEYATSNAITDIV..VGAST.KNTFIRR......FRNPDV.PTCLMKMAPDY.CTVHVIhkvkAIQVKAAKSP
  442-  496 (27.48/11.17)	...............................................................KAVLDH.TNVAIKILR..PDASQgRKQFQQEievlscMRHPNM..VLLLGACPEYgCLVY................
  506-  627 (156.42/114.82)	DRLCRRGKTLPIpWSVRF...RIAADIATGLLFLhQARPEpLVHRDLKPANILLDHnfvSKISDVGLARLVPQSAADVTqyRMTST.AGTFC........YIDPEYqQTGMLTTKSDI.YSLGIM....LLQIITARSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.71|      11|      20|     396|     406|       7
---------------------------------------------------------------------------
  396-  406 (17.83/11.77)	DRKKATDALNK
  418-  428 (18.88/12.90)	DIEAATHKFDK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20338 with Med32 domain of Kingdom Viridiplantae
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