<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20335

Description Uncharacterized protein
SequenceMSYTFNTQPIVTPAKKKDSRKDAADAAVRHCTPLSSRERGAGTAAVAVDGDRGSQYALKWAADHILARGHPFFLIHVRRKPTSFHAHGGKQFSISHVQDHVPAAFQAQVDLHAKDLMLPFQCFCSRRGLQCSEIVLDGTDVAKAIVDFVVRYKVDKLVLGAACRNAFTRSIWKLDVPTSVTKSAPSSCSVYVIAKGKISSFRPATYADDNSKEDLKSDLPVKQLEGEPTDKLHDGHDPSKPMPARAVMPIYASSDGSTGDGSLLSSDQRGHSDSSSLQTASSCPSEFFNDIDQHGNHLSSDAHSALNHGHSVYSPLLPTTCSESNCHHLTEEDDAELSLFKIERNQNNSDMLPWKYIEEHKEPPRNLESSSSNLPSQRNRPDVEPCSQSAIGPKHKHLSLDTLSSDSQRRERITEEFTDHNYHDITQPLLRRWPPIQSPRDNNIGGSAPEEPHMLPLTLKALPRPIETKRMLECLPTRLECRIYKPDDITNATEHFSDELKVGEGGYGPVYKATLDGTVVAIKILYSNVTQGLKQFQQEVELLNNIRHPNMVHLVGACPEYGCLVYEYMPNGSLEDRLFCRSGTPPLPWPLRFKIAVEIASGLLYLHKMKPEAFVHRDLKPGNILLDAHFVSKIGDVGLARIIPRSMDGAAATTQYRETAAAGTFCYIDPEYQKTGLVCTKSDVYALGVIYLQMVTAREPMGLAYTVSDALEEGTFADVLDGNVTGWPVREAQAFAELALKCCEMRRRDRPDLETVVMPELIRLHRLVSPAEYSSPPPPSSMDHAHHRSASEKDLHLDDDLVHILSDASMKGGISFAI
Length818
PositionTail
OrganismPanicum hallii var. hallii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum> Panicum sect. Panicum.
Aromaticity0.07
Grand average of hydropathy-0.430
Instability index51.32
Isoelectric point6.16
Molecular weight90574.34
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20335
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     110.82|      32|      36|     249|     283|       1
---------------------------------------------------------------------------
  235-  267 (52.01/29.73)	GHDPSKPMPARAVMPIYASSDGSTgDGSLLSSD
  270-  301 (58.80/35.35)	GHSDSSSLQTASSCPSEFFNDIDQ.HGNHLSSD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     174.56|      53|     131|     462|     517|       2
---------------------------------------------------------------------------
  462-  517 (88.09/71.06)	LPRPIETKRMLECL..........PTRLECRIYKPDDITnATEHFSDelKVGEGGYGPVYKATLDG
  587-  649 (86.47/58.85)	LPWPLRFKIAVEIAsgllylhkmkPEAFVHRDLKPGNIL.LDAHFVS..KIGDVGLARIIPRSMDG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     117.65|      32|     101|     422|     457|       5
---------------------------------------------------------------------------
  423-  454 (62.24/31.42)	HDITQPLLRRWPPIQSPRDNNIGGSAPEEP.HM
  765-  797 (55.41/18.27)	HRLVSPAEYSSPPPPSSMDHAHHRSASEKDlHL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.69|      15|      35|      53|      67|       6
---------------------------------------------------------------------------
   53-   67 (27.13/18.55)	GSQYALKWAADHILA
   89-  103 (27.57/18.97)	GKQFSISHVQDHVPA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      30.60|      10|      30|     367|     378|       7
---------------------------------------------------------------------------
  367-  378 (12.81/14.20)	LESSSSNlpSQR
  400-  409 (17.79/10.19)	LDTLSSD..SQR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20335 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DMLPWKYIEEHKEPPRNLESSSSNLPSQRNRPDVEPCSQSAIGPKHKHLSLDTLSSDSQRRERITEEFTDHN
2) KEDLKSDLPVKQLEGEPTDKLHDGHDPSKPMPARAVMPIYA
3) PLLRRWPPIQSPRDNNIGGSAPEEPHMLPLTLK
4) STGDGSLLSSDQRGHSDSSSLQTASSCPSEFFNDIDQHGNHLSSDAHSALNHGHSVYS
350
212
428
257
421
252
460
314










Molecular Recognition Features






MoRF SequenceStartStop




1) LPWKYI
352
357