<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20334

Description Uncharacterized protein
SequenceMQGRNKPSVGLTCTEKLPRVNWPNHADAVQSSSSKDDFLSSSFWFSLPTQRPNPEANSETMLSLRYSACKIQGPERLQVPWIEKAWWSLCNTQVPYKSYLRPGLSAKVKEHDRDHARTYGEGLCNINKIATVPGNRILSQESMHQPPESGYLANNGNHQPAGIHSSPRTHLSNHVLQADIIRTTNRSSFSKTDAELNWSAPAAYNMCTDDKLDAMDDDDILASIDVDRIVMEHYQATSTPRGLASDNMSTPSGNKCNFNGLEENNLPEEISVLCSHHSKLAFCPEAMSHLREMKDELIEVANKLLDGDCEFNPEHSEELRKRRVHLKRQVELLGEYLARSTQDEDRQRSHSMASTTAVQGHQPPMTPRSTFVMDADRFQSQVYIRNGPGANDLCYSSVPYSYMDNLNTPVNSVRREYTPRIIDINYTEGSNDKNWSSRNFPWTKDLEAKNKKVFGNRSFRPNQREIINATMSGNDVFVLMPTGGGKSLTYQLPALIGEGITLVVCPLVSLIQDQIMHLLQAEIPATYLSASMEWSKQQEILRELMSHTCHYKLLYVTPEKIAKSDALLRLLEHMYSRGHLSRIVIDEAHCVSQWGHDFRPDYQDLGILKQKFPNTPVLALTATATASVKEDVVQALGLANCIVFRQSFNRPNLRYYLRPKTKKCLEDIDGFIRKNHLNDCGIIYCLSRMDCEKVAEKLRDSGHKAAHYHGSMDPADRENVQEQWSMDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQPSSCVLYYQYSDYIRLKHMVTQGVVEQTTAASRRGLLSSQGQALETHKDNLLRMVSYCENDVDCRRLLQLIHFGEMFDPSHCAKTCDNCLKERRWVEKDVTNIARQLVELVKMTKQSCSSSHILEVYRGSVSQNVRKHRHETLSLHGAGKHLAKGEAARILRHLVTERILTEDVKKSDSYGSVSSVLMVNYTEAADLCSGKRSIILKVPTPENASKMGKIDESSFQQTNKTAQQHNEVDENLASVLYKTLHSLRRQILKGCGEGCRAYHIFRNETLKEISSRVPRTKEELLEINGIGKEKLNKYGDLVLATIEDFLSKNPNPRKNSSGGSSGSNEHTEAAKKRRGFTAGNASSNGGEDDFEERTVQSKKRPAKTRSTKQGVSDAASMVNGARCMDPDLDGVEVLDDELCSVQKPVASGRALPKWAPAKAKSSSVPPSNLFQEFGYVK
Length1221
PositionUnknown
OrganismPanicum hallii var. hallii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum> Panicum sect. Panicum.
Aromaticity0.06
Grand average of hydropathy-0.597
Instability index50.31
Isoelectric point8.05
Molecular weight137227.53
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20334
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     108.77|      36|      50|     356|     393|       1
---------------------------------------------------------------------------
  341-  368 (37.22/26.05)	T..QDEDRQR....SH.....................smastTAVQGHQPPMTPR
  370-  420 (51.02/38.64)	TfVMDADRFQ....SQVYIRNGPGANDLcyssvpysymdnlnTPVNSVRREYTPR
  421-  446 (20.53/ 8.53)	..IIDINYTEgsndKNWSSRNFPWTKDL...........................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     365.13|     124|     187|     739|     925|       2
---------------------------------------------------------------------------
  782-  924 (191.68/234.16)	YQYSDYIR.LKHMVTQGVV.EQTTAASRRGLLSSqgqalethkdnLLrMVSYCENDVDC...RRLLQLIHFGE....M..FDPSHCAKTcDNCLKERRWVE........KDVTNIARQlveLVKMTKQSCSSSHIlevYRG....SVSQNVRKHRHETLSLHGAGK
  926- 1072 (173.45/96.38)	LAKGEAARiLRHLVTERILtEDVKKSDSYGSVSS...........VL.MVNYTEAADLCsgkRSIILKVPTPEnaskMgkIDESSFQQT.NKTAQQHNEVDenlasvlyKTLHSLRRQ...ILKGCGEGCRAYHI...FRNetlkEISSRVPRTKEELLEINGIGK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     311.42|     103|     187|      13|     127|       3
---------------------------------------------------------------------------
   13-  127 (163.86/147.32)	CTeklPRVNWPNH...ADAVQ....SSSSKDDflSSSFWfSLP...................................TQRPNPEAnSETMLSLRYSACKIQGPERLQVPwieKAWWSLCNTQvpYKSYLRPGLSAKVKE.HDR..DHARTYGEGLCNIN
  165-  312 (147.56/97.62)	SS...PRTHLSNHvlqADIIRttnrSSFSKTD..AELNW.SAPaaynmctddkldamddddilasidvdrivmehyqaTSTPRGLA.SDNMSTPSGNKCNFNGLEENNLP...EEISVLCSHH..SKLAFCPEAMSHLREmKDEliEVANKLLDGDCEFN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.53|      28|      44|    1112|    1140|      13
---------------------------------------------------------------------------
 1112- 1140 (43.30/30.84)	EAAKKRRGFTAGNASSNGGE..DDfEERTVQ
 1157- 1186 (46.23/27.91)	DAASMVNGARCMDPDLDGVEvlDD.ELCSVQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20334 with Med34 domain of Kingdom Viridiplantae
Unable to open file!