<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20332

Description Uncharacterized protein
SequenceMAAVKASEARGDPPLLRAVELARVVAGEGAGIPSADLAGILVSNLCFAHNSPSLWKLVGQAMASRLLCPLHVLALLTPRVLPQRRAQPEAYRLYLELMKCNVTSSSLFMEAGPNRDKITKSIADALQLSKIYGYCGTEFGHVVIMFVLAVVTKLIDSILEDCGFPSGMAEGQESVYAIEGPQPMDLDVKMVSTENQNEHREQLRRKNTVMTLDVLHMMVADRKIQSFLRLIFLNMPEKFSSLSQRLSSIEAHKVALETLLPSGHKINDLLTDIRRVCNANYQPNNKHIVDVLGNMRSGGSLLGQVTGAGRAACWIIFDIYVENAIDGKHLSGISAIEVLKEMTKTLQVLNEASWQETFKALWISALRLVQRAREPLEGPIPHLDARLCMLLALMPLSVAAILKEESDMFGAEGSKILPRRQGLISSLQDLIQYSGLLVPPSSVVNAANAAASKAAIFKANYNAGVVNSSMVAQTDSSTKAVGNMLHLIIEACISRNLIDTSAYLWPGYVVSSGPLKDTTLPQESPWLNFIKGAPLSGPFIDALVATPASSVGELDKLYNIAANGSEEEKTAAAKILCGASLVRGWNIQEHVVGMVVKLLSASLPSDSSTSTPGSMNHYLAQMSTLNEILLGVSYGDAIHILSLYGMVPDVAAALMPLCEAFGSIAPPPNHKSTILGETSVYSVFSCAFLCLLRLWKFYKPPQEYCLAGRGGSVRLELTLDYLLLMRNNRIDFSNSSAPSRDSYNDMGSVNEVPAQPVYIDSFPKLRAWYFQNQACIASTLSGLCNKNPVHQVANKILSMICRKMNKGGVSSGNLSSTSSSSVSGSSVNASDDSFQRPAVPAWEFLEAVPFVLEAVLTACAHERLSSRDLTTSLRDLVDFLPASLAAIVSYFSAEITRGIWKTVPMNGIEWPSPGASLHSIEAEIKEILASAGVQIHSCYPRGVPPMLPLPMAALVSLTITFKLDRSLEYIQGVIGQALENCAGGSSWPSMPIIGALWTQKVRRWHDFIVLSCLRSPFGRDKDAVAQLVQSCFSSFLQSSSSGSDITANRGVGALLGDSITNQGLRLPMAPGFIYLRTCQTFHDTYFVSEVILKQVIEWSHKLANGWSFNGPPQLKSGRTSLSCAASMAHQVAMLGGGLLCIAGGPLVVQVLYEETLPTLLLSAREQSLKDPGPVSSTLQGYAMANMLFFCGSLLWGADRTSPVMKLSFLSRRPRVVGTHMDFIAGVLDGHILLGCDPGTWKAYVSRFVFLVVKFVPSWLRDIKLDTLKKIAAGLRSWREHDLALSLLERGGPQAISVVVETML
Length1303
PositionTail
OrganismPanicum hallii var. hallii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum> Panicum sect. Panicum.
Aromaticity0.07
Grand average of hydropathy0.159
Instability index48.12
Isoelectric point7.70
Molecular weight141279.09
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20332
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.64|      32|     259|     376|     414|       1
---------------------------------------------------------------------------
  376-  414 (47.61/41.68)	LEGPIPHLDArlcmllALMPL.....SVAAILKEESDMFGaEGS
  643-  679 (54.03/29.59)	LYGMVPDVAA......ALMPLceafgSIAPPPNHKSTILG.ETS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.34|      20|     254|     967|     987|       2
---------------------------------------------------------------------------
  967-  987 (34.22/20.22)	LEYIQGVI.GQALENCAGGsSW
 1220- 1240 (36.12/17.50)	MDFIAGVLdGHILLGCDPG.TW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.67|      31|     254|     582|     637|       3
---------------------------------------------------------------------------
  582-  614 (51.37/30.93)	VRGWNIQE......................HVVGMVVK......llSASLPSDSSTSTPGS
  765-  825 (35.30/28.04)	LRAWYFQNqaciastlsglcnknpvhqvanKILSMICRkmnkggvsSGNLSSTSSSSVSGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.43|      27|     790|     239|     268|       7
---------------------------------------------------------------------------
  239-  268 (37.19/35.22)	FSSLSQRLSS...IEAHKvALETLLpsGHKIND
 1032- 1061 (41.23/26.17)	FSSFLQSSSSgsdITANR.GVGALL..GDSITN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20332 with Med33 domain of Kingdom Viridiplantae
Unable to open file!