<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20331

Description Uncharacterized protein
SequenceMAPPSRDYWLGFFRGAGDSIFDAIDAAITVAASDHPGALRERRDGIAERLFTALLVTGATAAPGAAAVAGAAAGTPVAGAPTPAQLHHEGAASVPSLCSSDRAEAITDDGAPRCDDPVLAETERIKAILLNDQEKSEAELLELLRRLQELDLAFDTLDVTAIGKAVANFRKHSSKQIRNLVRSLIESWKHTVDVWIARRREAVVDQTPQSMGPSSLEQERGVASTPMDEGDLFATPSTTIRLSEENQGSKFSDGMDDDGSVMNNTDRDRGQQYPINQEPARRPPQMGQRYDPDPYWSQEHSAMRQSRPQELSNGQTKEQFVAEMLARPSNAESGPGRPQARPRQHQHASPAQGRPQSVPSEKPAAHHDANSVRAKLELAKNAKLEATKRKLQEGYQEFDNAKKQRTIQMVDPQNLPKQGNNRNFQPSGKPRNNSNINSNRNWSR
Length444
PositionUnknown
OrganismPanicum hallii var. hallii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum> Panicum sect. Panicum.
Aromaticity0.05
Grand average of hydropathy-0.823
Instability index49.10
Isoelectric point6.40
Molecular weight48692.39
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20331
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      71.94|      16|      19|     329|     346|       1
---------------------------------------------------------------------------
  275-  298 (20.89/ 7.62)	INQE..PARrpPQmgqrydP....DPYWSQ
  329-  346 (28.84/20.07)	SNAEsgPGR..PQ......A....RPRQHQ
  349-  367 (22.22/ 8.62)	SPAQ...GR..PQ......SvpseKPAAHH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.89|      11|      17|      62|      72|       2
---------------------------------------------------------------------------
   62-   72 (19.14/10.16)	APGAAAV..AGAA
   80-   92 (15.75/ 7.04)	APTPAQLhhEGAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.68|      13|      17|     200|     212|       4
---------------------------------------------------------------------------
  200-  212 (23.19/15.51)	REAVVDQTPQSMG
  218-  230 (23.49/15.81)	QERGVASTPMDEG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.15|      12|      19|      95|     106|       6
---------------------------------------------------------------------------
   95-  106 (21.43/14.85)	PSLCSSDRAEAI
  117-  128 (19.71/13.08)	PVLAETERIKAI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20331 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AVVDQTPQSMGPSSLEQERGVASTPMDEGDLFATPSTTIRLSEENQGSKFSDGMDDDGSVMNNTDRDRGQQYPINQEPARRPPQMGQRYDPDPYWSQEHSAMRQSRPQELSNGQTKEQFVAEMLARPSNAESGPGRPQARPRQHQHASPAQGRPQSVPSEKPAAHHDANSVRAKLELAKNAKLEATKRKLQEGYQEFDNAKKQRTIQMVDPQNLPKQGNNRNFQPSGKPRNNSNINSNRNWSR
202
444










Molecular Recognition Features






MoRF SequenceStartStop




1) FVAEML
2) SRDYWLGFFR
320
5
325
14