<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20330

Description Uncharacterized protein
SequenceMDAAAAAALGAAPGPGVPPPGAPVGEQQAAPRVERLSAGVQQQLNLEGMRARAVGLYKAISRILEDFDVIARTNPAASPKWQDVLGQFSMVSMELFNIVEDIKNVSKVFVVYPRNVNAENAPILPVMLSSKLLPEMEVEETTKREQLLSGITNLPVPTQIEKIKVRIDMIGSACETAEKVIADCRKSYGLGSRQGTNLVPTLDKAQAAKIQEQESLLRAAVNYGEGLRVPGDQRQPQSLPSHLVEVLPFGDGAQNVGDNSGGYPKSSSTFAPSGVNTQGNPIQASGGQLLGRPAPSPGGTGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTPQQQRQKLIQASQQQQLHAQQQLRPSAAGMLAQSTLPQLQDLQGQAQQKLQVSGQQQMQYNQALSQQFHNRQMQPGRMQPGMAQSQLNQGTQLRSHLGQFAGPANSAMFTAAQASSNSQMMANMPGTMQSQSLMPQMQYGMAGGHPQRSHPSQMLTDQMFGMGATNSSMMGMQQQQQGVYGNMQAGAQNMQQGMVGLQNQAQNPNFPQQRQQNQQ
Length551
PositionHead
OrganismPanicum hallii var. hallii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum> Panicum sect. Panicum.
Aromaticity0.04
Grand average of hydropathy-0.568
Instability index54.82
Isoelectric point9.13
Molecular weight59250.26
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
defense response to fungus	GO:0050832	IEA:EnsemblPlants
regulation of flower development	GO:0009909	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20330
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     270.98|      41|      41|     319|     359|       1
---------------------------------------------------------------------------
  217-  247 (30.53/ 6.67)	LRAAVNYgegLRVPGDQ.......RQ..PQSLP..SHL......VEV...........L
  319-  359 (74.87/28.32)	PRSGTNM...MNTPSPQ.......QHLTPQQQR..QKL......IQASQQQQLHAQQQL
  361-  400 (55.28/18.76)	PSAAGML...AQSTLPQ......lQDLQGQAQ...QKL.......QVSGQQQMQYNQAL
  429-  459 (34.64/ 8.68)	LRSHLGQ...FAGPANS.......AMFT.........A......AQASSNSQMMAN...
  461-  512 (40.24/11.41)	P..GTMQ...SQSLMPQmqygmagGH..PQRSHpsQMLtdqmfgMGATNSSMMGMQQQQ
  520-  550 (35.42/ 9.06)	QAGAQNM...QQGMVGL.......QN...QAQN..PNF......PQQRQQNQ.......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.52|      30|      42|     127|     158|       2
---------------------------------------------------------------------------
  127-  158 (42.91/42.75)	MLSSKL.LPEMEVEETTKREQLLS..GiTNLpVPT
  169-  201 (45.61/33.43)	MIGSACeTAEKVIADCRKSYGLGSrqG.TNL.VPT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      71.63|      17|      46|     248|     264|       3
---------------------------------------------------------------------------
  248-  263 (26.06/11.29)	........PFGDGAQ.NVGDNSGGY
  264-  288 (20.57/ 7.37)	PkssstfaPSGVNTQgNPIQASGGQ
  293-  311 (25.00/10.52)	P....apsPGGTGTP.NF.ENVSTP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20330 with Med8 domain of Kingdom Viridiplantae
Unable to open file!