<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20329

Description Uncharacterized protein
SequenceMMQSHLPSPARLGLTASSPSLPPNPSPLNPTSSPPHGNLPASATAGAGSGAAPTLTTSPSLLPLLPPLPRAQSLLQLISSLASNLFELSPNRAAWISAYRGSLPTFLPSASSSPPPLPTPISSTKDALSLLTTLQTQLFEAVAELQETLDLQDARARLAREARAKDAALLAFAKKLHEAHHVLDRLVDDYADYRRDPKRPRGAAAADDPEPVSDGDFGASLHSRLKLDDILSYAHSISCTTFAPPEHGAGLPLRGAFPPAPQEQEMRASKLYQFADLDVGVPKKPLEAKEGITAEVEAMPLYEPPPQEGAPRIPSTLPPMFPKELKPPPGWKPGDPITLPLDDILPGVKGEEPQAPVPQAPVSVRPVAPMGPEPIQVKPVQLDFETSSSDEYSSDVGSSEEDDED
Length405
PositionMiddle
OrganismPanicum hallii var. hallii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum> Panicum sect. Panicum.
Aromaticity0.05
Grand average of hydropathy-0.372
Instability index61.22
Isoelectric point4.87
Molecular weight42966.00
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20329
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     167.76|      39|      39|      14|      52|       1
---------------------------------------------------------------------------
   14-   52 (74.31/23.07)	LTASSPS....LPP.NP...SPLNPTSSPPHGNLPASATAGAGSGAA
   55-   94 (44.95/11.41)	LT.TSPSllplLPP.LPraqSLLQLISS.....LASNLFELSPNRAA
   96-  129 (48.50/12.82)	ISAYRGS....LPTfLP...S...ASSSPPPLPTPISSTKDALS...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     100.13|      20|      20|     299|     318|       2
---------------------------------------------------------------------------
  251-  272 (26.27/ 7.93)	L.PLrgaFPPAPQEQEMR.ASKLY
  299-  318 (41.08/16.92)	M.PL...YEPPPQEGAPRIPSTLP
  320-  340 (32.77/11.87)	MfPK...ELKPPPGWKPGDPITLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     106.35|      36|      38|     130|     166|       3
---------------------------------------------------------------------------
  130-  166 (52.96/38.96)	LLtTLQTQLFEAVAELQETL.DLQDAR..ARLAREARAKD
  169-  207 (53.40/34.53)	LL.AFAKKLHEAHHVLDRLVdDYADYRrdPKRPRGAAAAD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.73|      15|      15|     348|     362|       4
---------------------------------------------------------------------------
  348-  362 (28.46/12.73)	VKGEEPQAPVP.Q.APV
  364-  380 (21.27/ 7.62)	VRPVAPMGPEPiQvKPV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20329 with Med4 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KKPLEAKEGITAEVEAMPLYEPPPQEGAPRIPSTLPPMFPKELKPPPGWKPGDPITLPLDDILPGVKGEEPQAPVPQAPVSVRPVAPMGPEPIQVKPVQLDFETSSSDEYSSDVGSSEEDDED
2) MMQSHLPSPARLGLTASSPSLPPNPSPLNPTSSPPHGNLPASATAGAGSGAAPTLTTSPSLLP
283
1
405
63










Molecular Recognition Features






MoRF SequenceStartStop




1) IQVKPVQLDFET
375
386