<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20325

Description Uncharacterized protein
SequenceMASNMQPSGPPQPPRPPMMGSSSQPQNLGPPMPMQFRPVVPSQQPPQFMPPAAQQFRPVGQPMPGTNIGMPGQMPHFPQPGQHLSHSSQVPPASQGVPMAYQPGRPMSSAPMQPQQQAAYPGGHLPTMGAPMQPPSYTYQPTSIPPAVQPWGTAPGQSVPHVTPLVQPGHQLVPATTSLPSVNSSEPSSSDWQEHTAAEGKKYYYNKKTRQSSWEKPVELMTPLERADASTEWKEFTTPEGRKYYFNKVTKQSKWSIPDELKAARELAEKASNQQSDRETGITAASEPSTVPANQSSTAVGLIAPSAHDASANSVPPGAGPSHNVDNTSSSSTVDKQNGGPNTAAFPVTTSTEVQLVAADAGTSRNNNENSSVTTAADTEDGTSAEDLEEAKKTMPVVGKINVSPLEEKTSEEEPVVYATKAEAKNAFKSLLESVNVESDWTWDQTMRVIINDKRYGALKTLGERKQAFNEYLNQRKKFEAEEKRIKQRKARDDFLAMLEECKELTSSTRWSKAILMFEDDERFKAVERPREREDLFENYLVELHKKEKAKALEEHRRHLAEYKAFLESCDFIKATTQWRKVQERLEDDERCSRLEKIDRLNIFQEYIRHLEKEEEEQKRIQKEQVRRQERKNRDAFRKMLEEHVTDGTITAKTRWRDYCSQIKDSQAYLAVASNTSGSTPKELFDDVIEELDKQYLDDKTRVKEVVKSGKIPMTTSWKLEEFQTAILDDDALKGISTINIKLIYDDQIERLKEKEQKDAKKRQRLGENFSDLLYSITEISASSTWDDSKQLFEDSQEFRALDSETYARELFEECVVHLKERLKEKERLREEEKAKREKEREEREKKKEKERKEKERKEKDREKEREKEKGKDRSRRDEMDIDGADVENHGSKDKKRDKEKKHKRRHHDTDDVSSERDDKDDAKKSRRHSSDRKKSRKHTHASDSDSENRHKRHKKDRDSSRRNGAHELEDGELGEDGEVH
Length981
PositionUnknown
OrganismPanicum hallii var. hallii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum> Panicum sect. Panicum.
Aromaticity0.06
Grand average of hydropathy-1.201
Instability index57.03
Isoelectric point6.36
Molecular weight112102.30
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20325
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     137.99|      17|      17|      30|      46|       1
---------------------------------------------------------------------------
   10-   26 (25.05/ 9.39)	PPQ..PP..RPPMmgSSSQP.Q
   30-   46 (40.21/19.27)	PPM..PMQFRPVV..PSQQP.P
   50-   64 (23.73/ 8.53)	PPA..AQQFRPV.....GQPmP
  126-  142 (24.10/ 8.77)	PTMgaPMQ..PPS..YTYQP.T
  145-  160 (24.89/ 9.28)	PP...AVQPWGTA..PGQSV.P
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      30.06|      12|      15|     837|     851|       2
---------------------------------------------------------------------------
  820-  831 (19.58/ 6.20)	KERL...KEKERL.RE
  839-  854 (10.48/ 6.86)	KEREereKKKEKErKE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     187.88|      39|      39|     192|     230|       3
---------------------------------------------------------------------------
  192-  230 (75.22/43.61)	WQEHT....AAEGKKYYYNKKTRQSSWEKPVELMTPLERAD.AS
  233-  272 (66.72/37.85)	WKEFT....TPEGRKYYFNKVTKQSKWSIPDELKAARELAEkAS
  276-  311 (45.94/23.78)	SDRETgitaASEPSTVPAN....QSS..TAVGLIAPSAH.D.AS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.93|      14|      17|      88|     104|       4
---------------------------------------------------------------------------
   79-   98 (22.78/14.17)	QPGqhlshsSQVPPASQGVP
  167-  180 (26.15/ 7.95)	QPG......HQLVPATTSLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     148.00|      32|      32|     897|     928|       5
---------------------------------------------------------------------------
  856-  876 (26.14/ 9.95)	........ERK..EK.DREKERE..KEKGKDRSR
  877-  907 (47.24/24.59)	RDEMDIDGA.D..VENHGSKDKKRDKEKKHKRRH
  908-  939 (53.60/29.00)	HDTDDVSSERD..DKDDAKKSRRHSSDRKKSRKH
  941-  963 (21.03/ 6.40)	HASDSDSENRHkrHKKDRDSSRR...........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     444.87|      66|      66|     464|     529|       6
---------------------------------------------------------------------------
  412-  472 (61.52/31.84)	..........EEEPV....vyaTKAEAKNAFKSLLESV......NVESDWTW.....DQTMRVIINDKRYGAL...KTlgERKQAFNEY
  473-  540 (99.37/55.88)	LNQ.RKKFEAEEKRI.......KQRKARDDFLAMLEEC...K..ELTSSTRW.....SKAILMFEDDERFKAV...ERprEREDLFENY
  544-  607 (84.92/46.71)	LHK.KEKAKALEEH..........RRHLAEYKAFLESC...D..FIKATTQW.....RKVQERLEDDERCSRL...EK.iDRLNIFQEY
  608-  688 (76.41/41.30)	IRH.LEKEEEEQKRIqkeqvrrQERKNRDAFRKMLEEHvtdG..TITAKTRW.....RDYCSQIKDSQAYLAVasnTSgsTPKELFDDV
  689-  748 (46.03/22.00)	IEElDKQYLDDKTRV.......K............EVV...KsgKIPMTTSWkleefQTAIL...DDDALKGI...ST.iNIKLIYDDQ
  749-  814 (76.61/41.43)	IER.LKEKEQKDAKK.......RQRLG.ENFSDLLYSI...T..EISASSTW.....DDSKQLFEDSQEFRAL...DSetYARELFEE.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      82.38|      15|      17|     360|     374|       7
---------------------------------------------------------------------------
  319-  332 (16.27/ 6.88)	.AGPSHNVDNTSSSS
  335-  349 (21.48/11.62)	DKQNGGPNTAAFPVT
  360-  374 (25.08/14.91)	DAGTSRNNNENSSVT
  380-  394 (19.55/ 9.86)	EDGTSAEDLEEAKKT
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20325 with Med35 domain of Kingdom Viridiplantae
Unable to open file!