<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20324

Description Uncharacterized protein
SequenceMASAAAAERQLVVAVEGTAALGPYWSTIVGDYVEKIVRSFCVNEVPGQKLAGAPPELALVVFHTHGPYSAFGVQRSGWTKDIDAFLSWLSGISFSGGGFSEASTCEGLAEALTILQGSPNTTQSHQNHEAQKHCILVAASNPYPLPTPVYCIPTQSTDHKENTESSKEPSIADAEAVAKSFAQCSVSLSVISPKQLPTLKAIYNAGKRNPRAADPSVDHAKNPHFLVLLSENFMEARTALSRPLHGNLAPNQTVTKMDTAPAVTMAGPTSNANPSVNGPMMGRQPVGVGGVSTATVKLEPATIPPMVSAPAFSHVTPISNVASQGISALQTSSPSLISQEANIANDNVQEHKPIIHPVQQSVRPGGHGSLLNNLSQVRLMNSTSLGGGATSMGLPNIGATPIQVHMSNMISSGMTSTPSVISSMSGPGQPISTQQMVQSTALGSFGSNTSTVSGNSNIAVSSSLPSIQSSMSMGQSVQPVAQGGLMAGSQLGQGGSAANQNVSGLGPTAISSALAMMPTPGMAQSTGVNSLGVTNNSAMNMPIGQHPNAQQPPPKYVKIWEGTLSGQRQGQPVFICKLEGYRSGTASETLAADWPETMQIVRLIAQEHMNNKQYVGKADFLVFRTLNQHGFLGQLQEKKLCAVIQLPSQTLLLSMSDKAGRLIGMLFPGDMVVFKPQVSTQQPQMQQQQQLQQQQHLQQQQLQQQQHMHMQPQGLPLQQQQPAQMQPMQQQQAQMQPMQQQTQMQPMQQQTQMQPMQQHPPQMQPMQHQQQPQMQSMQHQQQPQMQAMQHQQPQQQQQMQQMQHQQQQMQPMQHQQQQQIPLQQQQQQMQQHQQQQMQQIQQQQHQQQMQQMQPQQQQQQPPQMVGTGMGQQYMQGHNRAVQMMQGKIAQQGPGSMPGGGFLP
Length903
PositionUnknown
OrganismPanicum hallii var. hallii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum> Panicum sect. Panicum.
Aromaticity0.04
Grand average of hydropathy-0.509
Instability index54.01
Isoelectric point8.38
Molecular weight97651.60
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
DNA binding	GO:0003677	IEA:EnsemblPlants

GO - Biological Process
defense response to fungus	GO:0050832	IEA:EnsemblPlants
jasmonic acid mediated signaling pathway	GO:0009867	IEA:EnsemblPlants
positive regulation of defense response	GO:0031349	IEA:EnsemblPlants
positive regulation of flower development	GO:0009911	IEA:EnsemblPlants
positive regulation of transcription, DNA-templated	GO:0045893	IEA:EnsemblPlants
red, far-red light phototransduction	GO:0009585	IEA:EnsemblPlants
response to far red light	GO:0010218	IEA:EnsemblPlants
response to red light	GO:0010114	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20324
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     386.14|      49|      49|     763|     811|       1
---------------------------------------------------------------------------
  516-  572 (50.33/ 8.48)	MMPTPgMAQSTGVNSL....................gvTNNSAMNMPIGQHpnaQQPPPKyvKIWEGTLSGQRQ...GQP
  644-  712 (52.92/ 9.33)	...IQ.LPSQTLLLSMsdkagrligmlfpgdmvvfkpqVSTQQPQMQ..QQ...QQLQQQ..QHLQQQQLQQQQhmhMQP
  714-  755 (84.95/19.96)	GLPLQ.QQQPAQMQPM......................Q.QQQAQMQPM........QQQ..TQMQPMQ.QQTQ...MQP
  763-  811 (108.77/27.86)	MQPMQ.HQQQPQMQSM......................QHQQQPQMQAMQH...QQPQQQ..QQMQQMQHQQQQ...MQP
  819-  861 (89.17/21.36)	QIPLQ.QQQQ.QMQ........................QHQQQ.QMQ..QI...QQQQHQ..QQMQQMQPQQQQ...QQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     292.81|      47|      47|     418|     464|       2
---------------------------------------------------------------------------
  229-  283 (41.94/14.54)	..LSENFMEARTALsrplhGNLAPNQT.VTK.MDTAPA...........VtmagptSN...AN...PSV.....NGPM......M.GR.
  284-  325 (42.41/14.78)	QPV................GVGGVSTA.TVKlEPATIP...........P......MV...SA...PAFshvtpISNV......A.SQG
  326-  368 (32.94/ 9.94)	..IS........AL.....QT..SSPS.LIS.QEANIA..................ND...NVqehKPI.....IHPVqqsvrpG.GHG
  372-  428 (58.46/22.98)	NNLSQVRLMNSTSL.....G..GGATS..M..GLPNIGatpiqvhmsnmI......SSgmtST...PSV.....ISSM......S.GPG
  429-  476 (75.13/31.50)	QPISTQQMVQSTAL.....GSFGSNTS.TVS.GNSNIA...........V......SS...SL...PSI.....QSSM......SmGQS
  478-  514 (41.93/14.54)	QPVAQGGLMAGSQL.....GQGGSAANqNVS.GLGPTA...........I......SS...AL..........................
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20324 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ALSRPLHGNLAPNQTVTKMDTAPAVTMAGPTSNANPSVNGPMMGRQPVGVGGVSTAT
2) GMTSTPSVISSMSGPGQPISTQQMVQSTALGSFGSN
3) LQTSSPSLISQEANIANDNVQEHKPIIHPVQQSVRPGGHGSLLNNL
4) QPQMQQQQQLQQQQHLQQQQLQQQQHMHMQPQGLPLQQQQPAQMQPMQQQQAQMQPMQQQTQMQPMQQQTQMQPMQQHPPQMQPMQHQQQPQMQSMQHQQQPQMQAMQHQQPQQQQQMQQMQHQQQQMQPMQHQQQQQIPLQQQQQQMQQHQQQQMQQIQQQQHQQQMQQMQPQQQQQQPPQMVGTGMGQQYMQGHNRAVQMMQGKIAQQGPGSMPGGGFLP
5) QSSMSMGQSVQPVAQGGLMAGSQLGQGGSAANQNVSG
6) VTNNSAMNMPIGQHPNAQQPPPKYVKIWEG
239
413
329
682
468
533
295
448
374
903
504
562










Molecular Recognition Features






MoRF SequenceStartStop




1) YVKIW
556
560