<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20322

Description Uncharacterized protein
SequenceMAEVSARGSPHSFPSSPLPPASPPQPGAERMFMRGGSGRSTGTSSSRSASLREIAEEAAVVADDGGGKLYVAVGKDFKDGKSSLSAAQSLGLLGGDLNLVLLHVHQPADRIMNGLCKVPASQLEEKELKAYRKIEQEETNTLLNQYMTYCRLYLKVQAETLVIEKNNVANGIVELINQHSITKLVMGMSSFSTKRKVPKSKVAAIVHQQAKPYCQIFFICKGSLACTRDAILDSIKADSPRSSSASTLSDETELPARSVSLPPGHPGDMGSPDQPFLPRRSNSVSYPSPVLIANNVERMLHIAQHSIHVKPRNFSPNSSHPSNEGSSSSSLKDSDSMDGSPLPASIVSSEEQQMPMVETGMQNEVFEQLQQVRNELERSRKEASEGRQKAERDLFEASRMFKARENSLLKEKREVEERLAKEKAFLEKENFQIFNDLQKANEQRAEMENKLLQTNSLLEQLKQLQGQLQREKEDALREAEEMRKLYGNSNFISAGAGEVSLTAFSYSEIQEATNNFDESREIGHGGCASVYMGFLRHTTVAIKKFNREGIVGEKEFNDEVEILCRMRHPNLVTLIGACKDPKVLVYEFLPNGSLEDRLQCKHHTEPLPWRMRIRIAADICTALIFLHSNKPKSIAHGDLKPDNVLLDANFVGKLGDFGISRSLNLTNTTVTPYHRTDQIKGTLGYMDPGYITSGELTAQYDVYSFGVVLLRLLTGKSPLGLQSEVEAALNSGVLHEILDTSAGGWPPEFAEELASLALKCCRYERKERPDLAKEAWGVLQAAMNEPTPSSSLPPEAPSYFICPMTQEVMRDPHIAADGFTYEGEAIKDWIQRGHKMSPMTYLNFAHHQLISNNALRFAIQEWQTKQQQ
Length868
PositionTail
OrganismPanicum hallii var. hallii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum> Panicum sect. Panicum.
Aromaticity0.06
Grand average of hydropathy-0.476
Instability index46.35
Isoelectric point6.14
Molecular weight96311.03
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



ECO:0000256	ARBA:ARBA00003861

GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20322
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     310.56|      71|     322|      12|      84|       1
---------------------------------------------------------------------------
   14-   84 (120.03/59.42)	PSSPLPPASPPQPGAERMFMRGGSGR..STGTSSSRSASLREI...AEEAAVVADDGGGK....LYVAVGKDFKDGKSSL
  263-  329 (101.31/50.05)	PGHPGDMGSPDQPFLPR...RSNSVSypSPVLIANNVERMLHI...AQHSIHVKPR...N....FSPNSSHPSNEGSSSS
  338-  408 (89.22/41.74)	DGSPL.PASIVSSEEQQMPM.....V..ETGMQNEVFEQLQQVrneLERSRKEASEGRQKaerdLFEA.SRMFKARENSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.60|      24|      48|     409|     432|       2
---------------------------------------------------------------------------
  409-  432 (37.33/27.05)	LKEKREVEERLAKEK..AFLEKENFQ
  458-  483 (33.27/23.23)	LEQLKQLQGQLQREKedALREAEEMR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     106.25|      33|      42|     515|     555|       3
---------------------------------------------------------------------------
  516-  549 (53.78/50.36)	FDESREI....GHGGCASVyMGFLRHTTVAIKKFNREG
  556-  592 (52.48/26.71)	FNDEVEIlcrmRHPNLVTL.IGACKDPKVLVYEFLPNG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20322 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IAQHSIHVKPRNFSPNSSHPSNEGSSSSSLKDSDSMDGSPLPASIVSSEEQQMPMVETGMQNEVFEQLQQVRNELERSRKEASEGRQKAERDLFEA
2) MAEVSARGSPHSFPSSPLPPASPPQPGAERMFMRGGSGRSTGTSSSRSAS
3) SPRSSSASTLSDETELPARSVSLPPGHPGDMGSPDQPFLPRRSNSV
302
1
239
397
50
284










Molecular Recognition Features






MoRF SequenceStartStop




NANANA