<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20319

Description Uncharacterized protein
SequenceMAMSAPPPASSWLEWTAEYTKAAQAESRPPPEWAARVAAASAAAGEGGDVPWSAGLAEVLARALLSGGAAAPAAAAAAAWKYAEAALAARLASPALLLAILSTRVIPQRFSRPMEYRLYLELLKRHGFSFHYQMKAANFRKIMDLIDGNLSLSKIFGISTCQPGVFVVHFVLCILWQLVDVVLDDEGLLELTPEKKAQWPTRPEDVSTFEGTFTEQRTEKIEKLQKMNTVTTMELIEHLLRNKVITRILSLARENMQSHWGAFTNRLHLLATNSSTLQNSAISLEPFQQLILGDCNVYGETKHNMRKRFHPIVASNPLSSPNGRCLGASYSALWIPIDMYLEDCLDGSIAATNSIEILSGLVKALQSVNRSTWHDAFLALWVASLRLVQREREPIEGPVPHLDTRLCMLLSITTLAIADIIEEADSLCNETELNSHSKEKKSIGNLRNELMLSLQILGDYESLLVPPPCVVPAANQAATKAAVFISGISINNGYMENVNGMNYSGNMRHLIVESCISRNLLDTSAYYWPGYIINHANSVSLTLPSQLAGWSSFMKGAPLTQSLVNMLISTPAPSLAEVEKLFEVAVNGSDDDNVSAATVLCGATLLRGWNFQEHTVRLVVKLLSPSDPIDYSGRESQLIKLGPMLNVILSGISAVDYAPIFSFHGLIPELAAALMAICEVFGCLSPSVSWTLRTGEEISAHTVFSNAFILLLRLWKFNHPPLEYCVMGDGAPVGSQLTPEYLLLLRNSQVLSSSSLAKQRNVQRQLQVPTSHPSCEHPIFMDSFPKLKLWYRQHQACLASTLSGLAHGTPVRNNVDSLLNLMFRKANKGGTSIGSISGSSSISNSSGPGGDDLHLWPQLPAWEILEAVPFVVDAALTACSHGRLFPRELATGLKDLADFLPASLATIVSYFSAEVTRGVWKPASMNGSDWPSPSVNLSMVEEHIKKIVAATGVDVPRLVTGGSSSGTLPLPLAAFVSLTITYKLDKASERFLNLAGPALENLAASCPWPSMAIVAALWTQKVKRWSDFLVFSASRTVFHHNNDAVNQLLRSCFAATLGMSSTSVCSCGGVASLLGHGYCPGGFSPVAPGILYLRIFRCIKDCSILAEDILYLLMLSVKDIAETTVPRQRSDKLKTTKYGMRHGRVSLSAAMTQVKVAASLGATLVWLSGGTALVQSLIQEMLPSWFLSVQNLDQGGTSGGMVYKLGGHALAYLAVYSGMFAWGIDPTPVSRRRERVTRSHLEFLASALDGKISLGCDPSLWRAYVTGFLGLVVECTPCWVQEVELRVLKRLSSGLRQWGEDELAVALLHRAGPEAMGTAAELILGSEW
Length1328
PositionTail
OrganismPanicum hallii var. hallii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum> Panicum sect. Panicum.
Aromaticity0.08
Grand average of hydropathy0.134
Instability index41.44
Isoelectric point6.61
Molecular weight144280.75
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20319
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     277.00|      67|      73|     658|     730|       1
---------------------------------------------------------------------------
  128-  176 (57.57/32.05)	.....FSFH.....YqmkAANFRKIMDLIdGNLS....LSKIFGIS..T....CQPGVFVVHFVLCI.LW..........
  656-  725 (118.66/90.70)	DYAPIFSFHGLIPEL...AAALMAICEVF.GCLS....PSVSWTLR..TGEEISAHTVFSNAFILLLRLWKFNHPPleyC
  729-  797 (100.77/61.52)	DGAPVGS..QLTPEY....LLLLRNSQVL.SSSSlakqRNVQRQLQvpTSHPSCEHPIFMDSFP.KLKLWYRQHQA...C
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     174.03|      53|     435|     536|     591|       2
---------------------------------------------------------------------------
  536-  591 (87.23/52.95)	ANSVSLTLPSQLAGWS.SFMKGA.PltqSLVNMLISTPAPSLAEVEKLFEVAVNGSDD
  973- 1027 (86.79/46.37)	AAFVSLTITYKLDKASeRFLNLAgP...ALENLAASCPWPSMAIVAALWTQKVKRWSD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.26|      24|     436|      29|      67|       3
---------------------------------------------------------------------------
   34-   57 (40.80/23.37)	AARVAAASAAAGEGGDVPWSAGLA
   69-   92 (39.46/25.36)	AAAPAAAAAAAWKYAEAALAARLA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     132.54|      43|      71|     856|     904|       4
---------------------------------------------------------------------------
  856-  904 (56.39/64.74)	WPQlPAWEiLEAVPFVVDAALTACshGRLFPReLATGLKDlADFLPASL
  930-  972 (76.16/53.99)	WPS.PSVN.LSMVEEHIKKIVAAT..GVDVPR.LVTGGSS.SGTLPLPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     194.34|      46|      46|     290|     335|       5
---------------------------------------------------------------------------
  253-  286 (44.46/28.83)	............RENMQSHWGAFTNRLHLLATNSSTLQNSAISLEP
  290-  335 (79.42/58.75)	LILGDCNVYGETKHNMRKRFHPIVASNPLSSPNGRCLGASYSALWI
  339-  382 (70.46/51.08)	MYLEDCLDGSIAATNSIEILSGLV..KALQSVNRSTWHDAFLALWV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     169.50|      51|      92|    1159|    1211|       6
---------------------------------------------------------------------------
 1159- 1211 (80.56/59.25)	SLGA.TLVWLSGGTALVqSLIQEMLPSWFLSVQNLDQGGTSGGMvYKLGGHALA
 1253- 1304 (88.94/56.52)	SLGCdPSLWRAYVTGFL.GLVVECTPCWVQEVELRVLKRLSSGL.RQWGEDELA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.13|      15|      16|    1079|    1093|       7
---------------------------------------------------------------------------
 1079- 1093 (30.76/18.08)	CPGGFSPVAPGILYL
 1098- 1112 (28.37/16.09)	CIKDCSILAEDILYL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20319 with Med33 domain of Kingdom Viridiplantae
Unable to open file!