<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20316

Description Uncharacterized protein
SequenceMAADAAELERRVMAAVKASAARGDPPLLQAAEAARCAREAAASGSASCGLALAEALVANLCFAHNTGSMWKLLDQAMSSRLVHPLHTLALLTPRVVPNRRQQPEAYRLYLELLGRYAVAPVYPERMERKSMLAKSIDDAMQLANRYGCQHLDFGHAVILFVLSLVEMLIDCILDDCGLLNISTHEHGNIYTKNMDFGGEGPHDSGDEHREHLRRKNILMSIEVVEKATANKIAQVFLRLVYLNTSSVFSIFGAGKGSCWVPFDMFMENAMDGRHLHAISSVEFLTELSKTLQVLNRATWQETFQALWISGLRLVQRGPEALEGPFPHLYSRLCMLLAIIPLSVATIVKEEVDKLDGGMVSAIKEELVSSLQILVQFSGLLSPPPATVHFANTAARKAAIVLSNLKSGNENLYGYSKDSSAIKAVGNMLHLIVEACIARNLIDTSAYFWPGYVVPLEASSQAQESPWSSLTEGSPLVELKDALMVTPASSVAELEKLYSFAVSGSEEEKLAASKVLCGASLLRGWNIQEHVVQIVLKLLSSFLPLDSGSDGRYVQHMPMLHALISGISSVDAVHILSMYGLVPEVAAMLMPLCEIFGSLPPSDHRSCNFEKASVYSVFSSAFLSLLRLWKFHRPPIENALSRHGVFVRSELSLDFLLLLRNSRSALKNLSNVSKSSIFQLDPSLQKPVYIDSFPKLRAWYFQNQACIASTLSTVYNRPNVLHVANNILKIICHKVPKDGILSVNPQSTSNSSMGSSPPPGVPEDMCQWPTLPAWDVLEAIPFVLEAVLTACAHGRLSSRDLITGLRDLADFLPASLAAIVSYFSAEITRGIWKPVMLNGTDWPSPAATLPVVESEINEVLAKAGVNINISSRPRSVMPMLPLPIAALISLSITVKMEEFSHLHGIIGQGIEICATSSSWPSMQIIGALWSQKVRRWHDFIILACSQSPFTRDNTAVSQLIRSCFTSFLGPLVDGRSCYVANRGVADLLGKTLDERARLVVAPGFLYMRSCRLFPDNNFVCEEILKVVIERARALANDCSSERPGHLRSDCMPLSAASSLVEQISSLAATMLCHAGGLNLIRLLYEHILPTLLLSAGEDKLGSAGHVCSLFEGYALAYVLLWSGASIWGVGETSPAYASIYTSKRQRIVDRHLEFMAKVMEGNIVLGCGETTWRSYVLCFVGLLVDFVPAWILEVKLETLQKLASGLRKWHKGDLALSLLERGGNKAVTSVVESLLGYAGAQFSE
Length1243
PositionTail
OrganismPanicum hallii var. hallii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum> Panicum sect. Panicum.
Aromaticity0.07
Grand average of hydropathy0.193
Instability index49.18
Isoelectric point6.52
Molecular weight135952.03
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20316
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     114.75|      31|      74|     667|     698|       1
---------------------------------------------------------------------------
  667-  698 (51.50/34.01)	NLSNVSKSSIFQlDPSLQKPVYIDSFPKLRAW
  743-  773 (63.25/38.19)	NPQSTSNSSMGS.SPPPGVPEDMCQWPTLPAW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.85|      13|     212|     960|     972|       2
---------------------------------------------------------------------------
  960-  972 (26.01/15.84)	RSCFTSFLGPLVD
 1172- 1184 (24.85/14.79)	RSYVLCFVGLLVD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.71|      11|      25|      19|      33|       4
---------------------------------------------------------------------------
   19-   33 (13.99/17.50)	SAARGdpplLQAAEA
   45-   55 (19.71/ 9.71)	SASCG....LALAEA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.26|      24|      25|      75|      99|       5
---------------------------------------------------------------------------
   75-   99 (37.40/33.19)	QAMSSRLVHPLHTLALLTPrVVPNR
  102-  125 (42.85/32.39)	QPEAYRLYLELLGRYAVAP.VYPER
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     152.05|      46|     355|     238|     284|       6
---------------------------------------------------------------------------
  238-  284 (80.31/49.63)	RLVYLNTSSVFSIFGAGKGS...CWVPFDMFMENAMdGRH...LHAISSVEFL
  604-  655 (71.74/39.87)	RSCNFEKASVYSVFSSAFLSllrLWKFHRPPIENAL.SRHgvfVRSELSLDFL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     161.77|      53|     163|    1017|    1074|      16
---------------------------------------------------------------------------
 1017- 1074 (76.07/55.90)	FVCEEILKVVIERARALAndcSSERPGHlRSDcMPLS.AASSLVEQISSLAATMLCHAG
 1185- 1238 (85.70/45.95)	FVPAWILEVKLETLQKLA...SGLRKWH.KGD.LALSlLERGGNKAVTSVVESLLGYAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.48|      13|     425|     145|     158|      17
---------------------------------------------------------------------------
  145-  158 (22.86/21.75)	RYgCQHLDFGHAVI
  551-  563 (26.62/18.85)	RY.VQHMPMLHALI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20316 with Med33 domain of Kingdom Viridiplantae
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