<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20313

Description Uncharacterized protein
SequenceMSSVYAWYFPYTKVPKFLVYYDGNFNFMIFFPKVCMHSLGELWYRPENFNYLLRKLQLIGALESKNVLPAYNLLDSLTMNIQNVISTRYQLDRSRLLGVLLSTQPCSSSVFSIFGAGKGSCWVPFDMFMENAMDGRHLHAISSVEFLTELSKTLQVLNRATWQETFQALWISGLRLVQRGPEALEGPFPHLYSRLCMLLAIIPLSVATIVKEEVDKLDGGMVSAIKEELVSSLQILVQFSGLLSPPPATVHFANTAARKAAIVLSNLKSGNENLYGYSKDSSAIKAVGNMLHLIVEACIARNLIDTSAYFWPGYVVPLEASSQAQESPWSSLTEGSPLVELKDALMVTPASSVAELEKLYSFAVSGSEEEKLAASKVLCGASLLRGWNIQEHVVQIVLKLLSSFLPLDSGSDGRYVQHMPMLHALISGISSVDAVHILSMYGLVPEVAAMLMPLCEIFGSLPPSDHRSCNFEKASVYSVFSSAFLSLLRLWKFHRPPIENALSRHGVFVRSELSLDFLLLLRNSRSALKNLSNVSKSSIFQLDPSLQKPVYIDSFPKLRAWYFQNQACIASTLSTVYNRPNVLHVANNILKIICHKVPKDGILSVNPQSTSNSSMGSSPPPGVPEDMCQWPTLPAWDVLEAIPFVLEAVLTACAHGRLSSRDLITGLRDLADFLPASLAAIVSYFSAEITRGIWKPVMLNGTDWPSPAATLPVVESEINEVLAKAGVNINISSRPRSVMPMLPLPIAALISLSITVKMEEFSHLHGIIGQGIEICATSSSWPSMQIIGALWSQKVRRWHDFIILACSQSPFTRDNTAVSQLIRSCFTSFLGPLVDGRSCYVANRGVADLLGKTLDERARLVVAPGFLYMRSCRLFPDNNFVCEEILKVVIERARALANDCSSERPGHLRSDCMPLSAASSLVEQISSLAATMLCHAGGLNLIRLLYEHILPTLLLSAGEDKLGSAGHVCSLFEGYALAYVLLWSGASIWGVGETSPAYASIYTSKRQRIVDRHLEFMAKVMEGNIVLGCGETTWRSYVLCFVGLLVDFVPAWILEVKLETLQKLASGLRKWHKGDLALSLLERGGNKAVTSVVESLLGYAGAQFSE
Length1106
PositionTail
OrganismPanicum hallii var. hallii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum> Panicum sect. Panicum.
Aromaticity0.09
Grand average of hydropathy0.229
Instability index51.64
Isoelectric point6.94
Molecular weight121682.86
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20313
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     114.75|      31|      74|     530|     561|       1
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  530-  561 (51.50/31.97)	NLSNVSKSSIFQlDPSLQKPVYIDSFPKLRAW
  606-  636 (63.25/35.95)	NPQSTSNSSMGS.SPPPGVPEDMCQWPTLPAW
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     259.11|      83|     160|     848|     937|       2
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  848-  937 (123.24/107.16)	DLLGKTLDerARLVVAPGFLYMRS...CRLFPDNNFVCEEILKVVIERARALAndcSSERPGHlRSDcMPLS.AASSLVEQISSLAATMLCHAG
 1015- 1101 (135.87/91.38)	EFMAKVME..GNIVLGCGETTWRSyvlCFVGLLVDFVPAWILEVKLETLQKLA...SGLRKWH.KGD.LALSlLERGGNKAVTSVVESLLGYAG
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.04|      15|     159|      22|      36|       3
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    8-   29 (23.19/14.05)	YFPYTKV..pkflvyyDGNFNFMI
   30-   53 (22.85/13.73)	FFPKVCMhslgelwyrPENFNYLL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     249.23|      81|     368|      59|     147|       4
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   59-  147 (124.03/102.58)	IGALESKNVLPAYNLLDSLT...MNIQNVISTryqLDRSRLLgvllSTQPCSSSVFSIFGAGKGS...CWVPFDMFMENAMdGRH...LHAISSVEFL
  429-  518 (125.20/81.49)	ISSVDAVHILSMYGLVPEVAamlMPLCEIFGS...LPPSDHR....SCNFEKASVYSVFSSAFLSllrLWKFHRPPIENAL.SRHgvfVRSELSLDFL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.70|      10|     319|     411|     422|       5
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  411-  422 (16.61/16.93)	SDGRYVqhMPML
  733-  742 (21.09/12.55)	SRPRSV..MPML
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.02|      23|      35|     176|     198|       6
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  176-  198 (42.48/28.61)	LVQRGPEALEGPF.....PHLYSRLCML
  209-  236 (30.54/18.36)	IVKEEVDKLDGGMvsaikEELVSSLQIL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.19|      20|      76|     685|     706|       9
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  685-  706 (33.87/31.45)	FS...AEITRGIwkPVMLNGTDWPS
  761-  783 (33.32/21.77)	FShlhGIIGQGI..EICATSSSWPS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20313 with Med33 domain of Kingdom Viridiplantae
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