<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20311

Description Uncharacterized protein
SequenceMAADAAELERRVMAAVKASAARGDPPLLQAAEAARCAREAAASGSASCGLALAEALVANLCFAHNTGSMWKLLDQAMSSRLVHPLHTLALLTPRVVPNRRQQPEAYRLYLELLGRYAVAPVYPERMERKSMLAKSIDDAMQLANRYGCQHLDFGHAVILFVLSLVEMLIDCILDDCGLLNISTHEHGNIYTKNMDFGGEGPHDSGDEHREHLRRKNILMSIEVVEKATANKIAQVFLRLVYLNTSSVFSIFGAGKGSCWVPFDMFMENAMDGRHLHAISSVEFLTELSKTLQVLNRATWQETFQALWISGLRLVQRGPEALEGPFPHLYSRLCMLLAIIPLSVATIVKEEVDKLDGGMVSAIKEELVSSLQILVQFSGLLSPPPATVHFANTAARKAAIVLSNLKSGNENLYGYSKDSSAIKAGNMLHLIVEACIARNLIDTSAYFWPGYVVPLEASSQAQESPWSSLTEGSPLVELKDALMVTPASSVAELEKLYSFAVSGSEEEKLAASKVLCGASLLRGWNIQEHVVQIVLKLLSSFLPLDSGSDGRYVQHMPMLHALISGISSVDAVHILSMYGLVPEVAAMLMPLCEIFGSLPPSDHRSCNFEKASVYSVFSSAFLSLLRLWKFHRPPIENALSRHGVFVRSELSLDFLLLLRNSRSALKNLSNVSKSSIFQLDPSLQKPVYIDSFPKLRAWYFQNQACIASTLSTVYNRPNVLHVANNILKIICHKVPKDGILSVNPQSTSNSSMGSSPPPGVPEDMCQWPTLPAWDVLEAIPFVLEAVLTACAHGRLSSRDLITGLRDLADFLPASLAAIVSYFSAEITRGIWKPVMLNGTDWPSPAATLPVVESEINEVLAKAGVNINISSRPRSVMPMLPLPIAALISLSITVKMEEFSHLHGIIGQGIEICATSSSWPSMQIIGALWSQKVRRWHDFIILACSQSPFTRDNTAVSQLIRSCFTSFLGPLVDGRSCYVANRGVADLLGKTLDERARLVVAPGFLYMRSCRLFPDNNFVCEEILKVVIERARALANDCSSERPGHLRSDCMPLSAASSLVEQISSLAATMLCHAGGLNLIRLLYEHILPTLLLSAGEDKLGSAGHVCSLFEGYALAYVLLWSGASIWGVGETSPAYASIYTSKRQRIVDRHLEFMAKVMEGNIVLGCGETTWRSYVLCFVGLLVDFVPAWILEVKLETLQKLASGLRKWHKGDLALSLLERGGNKAVTSVVESLLGYAGAQFSE
Length1242
PositionTail
OrganismPanicum hallii var. hallii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum> Panicum sect. Panicum.
Aromaticity0.07
Grand average of hydropathy0.190
Instability index49.28
Isoelectric point6.52
Molecular weight135852.90
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20311
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     114.75|      31|      74|     666|     697|       1
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  666-  697 (51.50/38.81)	NLSNVSKSSIFQlDPSLQKPVYIDSFPKLRAW
  742-  772 (63.25/43.60)	NPQSTSNSSMGS.SPPPGVPEDMCQWPTLPAW
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     104.15|      33|     424|     515|     552|       2
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  515-  552 (50.55/36.89)	CGASLLRGWNIQehVVQIVLKLLSSFL.PLdsgSDGR..YV
  942-  977 (53.60/26.56)	CSQSPFTRDNTA..VSQLIRSCFTSFLgPL...VDGRscYV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     195.81|      47|     356|     238|     284|       3
---------------------------------------------------------------------------
   62-   91 (42.33/30.22)	.............FAHNTGS...MW....KLLDQAMSSRL...VHPLHTLALL
  238-  284 (84.24/70.00)	RLVYLNTSSVFSIFGAGKGS...CWVPFDMFMENAMDGRH...LHAISSVEFL
  603-  654 (69.24/55.76)	RSCNFEKASVYSVFSSAFLSllrLWKFHRPPIENAL.SRHgvfVRSELSLDFL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     140.09|      46|     374|     775|     862|       5
---------------------------------------------------------------------------
  795-  842 (74.71/102.38)	SS..RDLITGL.RDLADFLPASLAAIVSYFS...AEITRGIwkPVMLNGTDWPS
  868-  919 (65.38/21.30)	SSrpRSVMPMLpLPIAALISLSITVKMEEFShlhGIIGQGI..EICATSSSWPS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.64|      22|     356|      16|      41|       6
---------------------------------------------------------------------------
    2-   29 (25.61/22.15)	AADAAELERRvmAAVKASAARGdpplLQ
   30-   51 (39.03/21.44)	AAEAARCARE..AAASGSASCG....LA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     119.56|      36|     424|     149|     184|       8
---------------------------------------------------------------------------
  149-  184 (64.56/38.43)	QHLDFGHAV...........ILFVLSLVEMLIDCILDDC...GLLNISTH
  553-  602 (55.00/31.66)	QHMPMLHALisgissvdavhILSMYGLVPEVAAMLMPLCeifGSLPPSDH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     256.94|      83|     162|     984|    1073|       9
---------------------------------------------------------------------------
  984- 1073 (123.06/103.48)	DLLGKTLDerARLVVAPGFLYMRS...CRLFPDNNFVCEEILKVVIERARALAndcSSERPGHlRSDcMPLS.AASSLVEQISSLAATMLCHAG
 1151- 1237 (133.88/86.93)	EFMAKVME..GNIVLGCGETTWRSyvlCFVGLLVDFVPAWILEVKLETLQKLA...SGLRKWH.KGD.LALSlLERGGNKAVTSVVESLLGYAG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20311 with Med33 domain of Kingdom Viridiplantae
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