<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20310

Description Uncharacterized protein
SequenceMAADAAELERRVMAAVKASAARGDPPLLQAAEAARCAREAAASGSASCGLALAEALVANLCFAHNTGSMWKLLDQAMSSRLVHPLHTLALLTPRVVPNRRQQPEAYRLYLELLGRYAVAPVYPERMERKSMLAKSIDDAMQLANRYGCQHLDFGHAVILFVLSLVEMLIDCILDDCGLLNISTHEHGNIYTKNMDFGGEGPHDSGDEHREHLRRKNILMSIEVVEKATANKIAQVFLRLVYLNTPENFNYLLRKLQLIGALESKNVLPAYNLLDSLTMNIQNVISTRYQLDRSRLLGVLLSTQPCSSSVFSIFGAGKGSCWVPFDMFMENAMDGRHLHAISSVEFLTELSKTLQVLNRATWQETFQALWISGLRLVQRGPEALEGPFPHLYSRLCMLLAIIPLSVATIVKEEVDKLDGGMVSAIKEELVSSLQILVQFSGLLSPPPATVHFANTAARKAAIVLSNLKSGNENLYGYSKDSSAIKAGNMLHLIVEACIARNLIDTSAYFWPGYVVPLEASSQAQESPWSSLTEGSPLVELKDALMVTPASSVAELEKLYSFAVSGSEEEKLAASKVLCGASLLRGWNIQEHVVQIVLKLLSSFLPLDSGSDGRYVQHMPMLHALISGISSVDAVHILSMYGLVPEVAAMLMPLCEIFGSLPPSDHRSCNFEKASVYSVFSSAFLSLLRLWKFHRPPIENALSRHGVFVRSELSLDFLLLLRNSRSALKNLSNVSKSSIFQLDPSLQKPVYIDSFPKLRAWYFQNQACIASTLSTVYNRPNVLHVANNILKIICHKVPKDGILSVNPQSTSNSSMGSSPPPGVPEDMCQWPTLPAWDVLEAIPFVLEAVLTACAHGRLSSRDLITGLRDLADFLPASLAAIVSYFSAEITRGIWKPVMLNGTDWPSPAATLPVVESEINEVLAKAGVNINISSRPRSVMPMLPLPIAALISLSITVKMEEFSHLHGIIGQGIEICATSSSWPSMQIIGALWSQKVRRWHDFIILACSQSPFTRDNTAVSQLIRSCFTSFLGPLVDGRSCYVANRGVADLLGKTLDERARLVVAPGFLYMRSCRLFPDNNFVCEEILKVVIERARALANDCSSERPGHLRSDCMPLSAASSLVEQISSLAATMLCHAGGLNLIRLLYEHILPTLLLSAGEDKLGSAGHVCSLFEGYALAYVLLWSGASIWGVGETSPAYASIYTSKRQRIVDRHLEFMAKVMEGNIVLGCGETTWRSYVLCFVGLLVDFVPAWILEVKLETLQKLASGLRKWHKGDLALSLLERGGNKAVTSVVESLLGYAGAQFSE
Length1304
PositionTail
OrganismPanicum hallii var. hallii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum> Panicum sect. Panicum.
Aromaticity0.07
Grand average of hydropathy0.180
Instability index49.18
Isoelectric point6.66
Molecular weight142885.00
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20310
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     134.65|      43|     318|     356|     420|       1
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  356-  398 (80.84/43.53)	LNRATWQETFQALWISGLRL..VQRGP..EAL..EGPF..PHLYSRLCMLL
  669-  719 (53.81/22.91)	FEKASVYSVFSSAFLSLLRLwkFHRPPieNALsrHGVFvrSELSLDFLLLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     114.75|      31|      74|     728|     759|       2
---------------------------------------------------------------------------
  728-  759 (51.50/34.22)	NLSNVSKSSIFQlDPSLQKPVYIDSFPKLRAW
  804-  834 (63.25/38.47)	NPQSTSNSSMGS.SPPPGVPEDMCQWPTLPAW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     139.24|      46|     374|     837|     924|       4
---------------------------------------------------------------------------
  857-  904 (73.66/61.50)	SS..RDLITGL.RDLADFLPASLAAIVSYFS...AEITRGIwkPVMLNGTDWPS
  930-  981 (65.58/51.74)	SSrpRSVMPMLpLPIAALISLSITVKMEEFShlhGIIGQGI..EICATSSSWPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     269.51|      76|     424|      16|      97|       6
---------------------------------------------------------------------------
   16-   93 (123.67/74.13)	VKASAARGDPP.LLQAAEAARCAREAAASG..SA.SCGLALAEAL..VANLCFAHNTGSMWKLLDQAMSSRlvHPLHTLALLTP
  436-  510 (102.75/55.42)	VQFSGLLSPPPaTVHFANTA..ARKAAIVL..SNlKSG...NENLygYSKDSSAIKAGNMLHLIVEACIAR..NLIDTSAYFWP
  517-  563 (43.10/29.19)	.................EASSQAQESPWSSltEG.SPLVELKDAL..M..VTPASSVAELEKLYSFAVS...............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     259.11|      83|     162|    1046|    1135|       7
---------------------------------------------------------------------------
 1046- 1135 (123.24/104.29)	DLLGKTLDerARLVVAPGFLYMRS...CRLFPDNNFVCEEILKVVIERARALAndcSSERPGHlRSDcMPLS.AASSLVEQISSLAATMLCHAG
 1213- 1299 (135.87/88.89)	EFMAKVME..GNIVLGCGETTWRSyvlCFVGLLVDFVPAWILEVKLETLQKLA...SGLRKWH.KGD.LALSlLERGGNKAVTSVVESLLGYAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.53|      27|     424|     577|     605|       9
---------------------------------------------------------------------------
  577-  605 (42.88/43.65)	CGASLLRGWNIQehVVQIVLKLLSSFL.PL
 1004- 1031 (45.65/37.34)	CSQSPFTRDNTA..VSQLIRSCFTSFLgPL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20310 with Med33 domain of Kingdom Viridiplantae
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