<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20308

Description Uncharacterized protein
SequenceMSSVYAWYFPYTKVPKFLVYYDGNFNFMIFFPKVCMHSLGELWYRPENFNYLLRKLQLIGALESKNVLPAYNLLDSLTMNIQNVISTRYQLDRSRLLGVLLSTQPCSSSVFSIFGAGKGSCWVPFDMFMENAMDGRHLHAISSVEFLTELSKTLQVLNRATWQETFQALWISGLRLVQRGPEALEGPFPHLYSRLCMLLAIIPLSVATIVKEEVDKLDGGMVSAIKEELVSSLQILVQFSGLLSPPPATVHFANTAARKAAIVLSNLKSGNENLYGYSKDSSAIKAGNMLHLIVEACIARNLIDTSAYFWPGYVVPLEASSQAQESPWSSLTEGSPLVELKDALMVTPASSVAELEKLYSFAVSGSEEEKLAASKVLCGASLLRGWNIQEHVVQIVLKLLSSFLPLDSGSDGRYVQHMPMLHALISGISSVDAVHILSMYGLVPEVAAMLMPLCEIFGSLPPSDHRSCNFEKASVYSVFSSAFLSLLRLWKFHRPPIENALSRHGVFVRSELSLDFLLLLRNSRSALKNLSNVSKSSIFQLDPSLQKPVYIDSFPKLRAWYFQNQACIASTLSTVYNRPNVLHVANNILKIICHKVPKDGILSVNPQSTSNSSMGSSPPPGVPEDMCQWPTLPAWDVLEAIPFVLEAVLTACAHGRLSSRDLITGLRDLADFLPASLAAIVSYFSAEITRGIWKPVMLNGTDWPSPAATLPVVESEINEVLAKAGVNINISSRPRSVMPMLPLPIAALISLSITVKMEEFSHLHGIIGQGIEICATSSSWPSMQIIGALWSQKVRRWHDFIILACSQSPFTRDNTAVSQLIRSCFTSFLGPLVDGRSCYVANRGVADLLGKTLDERARLVVAPGFLYMRSCRLFPDNNFVCEEILKVVIERARALANDCSSERPGHLRSDCMPLSAASSLVEQISSLAATMLCHAGGLNLIRLLYEHILPTLLLSAGEDKLGSAGHVCSLFEGYALAYVLLWSGASIWGVGETSPAYASIYTSKRQRIVDRHLEFMAKVMEGNIVLGCGETTWRSYVLCFVGLLVDFVPAWILEVKLETLQKLASGLRKWHKGDLALSLLERGGNKAVTSVVESLLGYAGAQFSE
Length1105
PositionTail
OrganismPanicum hallii var. hallii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum> Panicum sect. Panicum.
Aromaticity0.09
Grand average of hydropathy0.225
Instability index51.75
Isoelectric point6.94
Molecular weight121583.73
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20308
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     114.75|      31|      74|     529|     560|       1
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  529-  560 (51.50/39.61)	NLSNVSKSSIFQlDPSLQKPVYIDSFPKLRAW
  605-  635 (63.25/44.51)	NPQSTSNSSMGS.SPPPGVPEDMCQWPTLPAW
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     139.24|      46|     374|     638|     725|       2
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  658-  705 (73.66/68.83)	SS..RDLITGL.RDLADFLPASLAAIVSYFS...AEITRGIwkPVMLNGTDWPS
  731-  782 (65.58/57.94)	SSrpRSVMPMLpLPIAALISLSITVKMEEFShlhGIIGQGI..EICATSSSWPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.04|      15|     158|      22|      36|       3
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    8-   29 (23.19/13.16)	YFPYTKV..pkflvyyDGNFNFMI
   30-   53 (22.85/12.85)	FFPKVCMhslgelwyrPENFNYLL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     249.23|      81|     367|      59|     147|       4
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   59-  147 (124.03/85.23)	IGALESKNVLPAYNLLDSLT...MNIQNVISTryqLDRSRLLgvllSTQPCSSSVFSIFGAGKGS...CWVPFDMFMENAMdGRH...LHAISSVEFL
  428-  517 (125.20/67.67)	ISSVDAVHILSMYGLVPEVAamlMPLCEIFGS...LPPSDHR....SCNFEKASVYSVFSSAFLSllrLWKFHRPPIENAL.SRHgvfVRSELSLDFL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.85|      13|     213|     822|     834|       5
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  822-  834 (26.01/15.73)	RSCFTSFLGPLVD
 1034- 1046 (24.85/14.69)	RSYVLCFVGLLVD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20308 with Med33 domain of Kingdom Viridiplantae
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