<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20307

Description Uncharacterized protein
SequenceMAADAAELERRVMAAVKASAARGDPPLLQAAEAARCAREAAASGSASCGLALAEALVANLCFAHNTGSMWKLLDQAMSSRLVHPLHTLALLTPRVVPNRRQQPEAYRLYLELLGRYAVAPVYPERMERKSMLAKSIDDAMQLANRYGCQHLDFGHAVILFVLSLVEMLIDCILDDCGLLNISTHEHGNIYTKNMDFGGEGPHDSGDEHREHLRRKNILMSIEVVEKATANKIAQVFLRLVYLNTPENFNYLLRKLQLIGALESKNVLPAYNLLDSLTMNIQNVISTRYQLDRSRLLGVLLSTQPCSSSVFSIFGAGKGSCWVPFDMFMENAMDGRHLHAISSVEFLTELSKTLQVLNRATWQETFQALWISGLRLVQRGPEALEGPFPHLYSRLCMLLAIIPLSVATIVKEEVDKLDGGMVSAIKEELVSSLQILVQFSGLLSPPPATVHFANTAARKAAIVLSNLKSGNENLYGYSKDSSAIKAVGNMLHLIVEACIARNLIDTSAYFWPGYVVPLEASSQAQESPWSSLTEGSPLVELKDALMVTPASSVAELEKLYSFAVSGSEEEKLAASKVLCGASLLRGWNIQEHVVQIVLKLLSSFLPLDSGSDGRYVQHMPMLHALISGISSVDAVHILSMYGLVPEVAAMLMPLCEIFGSLPPSDHRSCNFEKASVYSVFSSAFLSLLRLWKFHRPPIENALSRHGVFVRSELSLDFLLLLRNSRSALKNLSNVSKSSIFQLDPSLQKPVYIDSFPKLRAWYFQNQACIASTLSTVYNRPNVLHVANNILKIICHKVPKDGILSVNPQSTSNSSMGSSPPPGVPEDMCQWPTLPAWDVLEAIPFVLEAVLTACAHGRLSSRDLITGLRDLADFLPASLAAIVSYFSAEITRGIWKPVMLNGTDWPSPAATLPVVESEINEVLAKAGVNINISSRPRSVMPMLPLPIAALISLSITVKMEEFSHLHGIIGQGIEICATSSSWPSMQIIGALWSQKVRRWHDFIILACSQSPFTRDNTAVSQLIRSCFTSFLGPLVDGRSCYVANRGVADLLGKTLDERARLVVAPGFLYMRSCRLFPDNNFVCEEILKVVIERARALANDCSSERPGHLRSDCMPLSAASSLVEQISSLAATMLCHAGGLNLIRLLYEHILPTLLLSAGEDKLGSAGHVCSLFEGYALAYVLLWSGASIWGVGETSPAYASIYTSKRQRIVDRHLEFMAKVMEGNIVLGCGETTWRSYVLCFVGLLVDFVPAWILEVKLETLQKLASGLRKWHKGDLALSLLERGGNKAVTSVVESLLGYAGAQFSE
Length1305
PositionTail
OrganismPanicum hallii var. hallii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum> Panicum sect. Panicum.
Aromaticity0.07
Grand average of hydropathy0.183
Instability index49.08
Isoelectric point6.66
Molecular weight142984.13
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20307
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     114.75|      31|      74|     729|     760|       1
---------------------------------------------------------------------------
  729-  760 (51.50/35.05)	NLSNVSKSSIFQlDPSLQKPVYIDSFPKLRAW
  805-  835 (63.25/39.38)	NPQSTSNSSMGS.SPPPGVPEDMCQWPTLPAW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.85|      13|     212|    1022|    1034|       2
---------------------------------------------------------------------------
 1022- 1034 (26.01/17.51)	RSCFTSFLGPLVD
 1234- 1246 (24.85/16.36)	RSYVLCFVGLLVD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     156.74|      49|     212|     894|     943|       3
---------------------------------------------------------------------------
  894-  943 (81.44/63.47)	KPVMLNGTDWPSPAATLPV..VESEINEVLAKA.GVNInISSRPRSVMPMLPL
 1103- 1154 (75.29/53.20)	RPGHLRSDCMPLSAASSLVeqISSLAATMLCHAgGLNL.IRLLYEHILPTLLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     253.71|      81|     368|     258|     346|       4
---------------------------------------------------------------------------
  258-  346 (126.42/103.18)	IGALESKNVLPAYNLLDSLT...MNIQNVISTryqLDRSRLLgvllSTQPCSSSVFSIFGAGKGS...CWVPFDMFMENAMdGRH...LHAISSVEFL
  628-  717 (127.29/82.32)	ISSVDAVHILSMYGLVPEVAamlMPLCEIFGS...LPPSDHR....SCNFEKASVYSVFSSAFLSllrLWKFHRPPIENAL.SRHgvfVRSELSLDFL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     274.93|      76|     417|      16|      97|       5
---------------------------------------------------------------------------
   16-   93 (121.64/80.51)	VKASAARGDPP.LLQAAEAARCAREAAASG..SA.SCGLALAEALVANLCFAHNTGSMWKLLDQAMSSRlvHPLHTLALLTP
  436-  511 (110.41/66.80)	VQFSGLLSPPPaTVHFANTA..ARKAAIVL..SNlKSGNENLYGYSKDSSAIKAVGNMLHLIVEACIAR..NLIDTSAYFWP
  518-  564 (42.88/32.16)	.................EASSQAQESPWSSltEG.SPLVELKDALM..VTPASSVAELEKLYSFAVS...............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.44|      20|     892|     363|     383|      12
---------------------------------------------------------------------------
  363-  383 (30.86/21.84)	ETFQALwISGLRLVQRGPEAL
 1258- 1277 (34.58/18.36)	ETLQKL.ASGLRKWHKGDLAL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20307 with Med33 domain of Kingdom Viridiplantae
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