<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20304

Description Uncharacterized protein
SequenceMADGLDRWRDFFRGAGAGICDVIENAILVAAADAPRELLHRRDRIAERLFTAHRRDAAAPAPASLGSAAASATPATPVEEDKGSVRRVAEKESKVDSSSNGAHGGGHGHGDEDDDSDSDDERLRRAAASNYGHSYDDDDDEDQEEDEQQHAADDAEEEEEDHEAEELEALTNEIDEESQIVGEVLRIKDLLLHKEDQSDATLFESLRRLQLMQLSVSTLKATEIGRAVNRLRKHNSQQIRHLVRTLIEGWKVLVDEWVSTTNAALADNSPGSSNPSVVDEEDEEGLPSPPLDEGAFFATQPTSIQLSEFFDEMDEDGNLRHNSDASLGNKRGNNGGRPANYSAVATQEPPRHSPGAVEKVQFRRPDLARQEPSMRQANPQKPQSSSLQVKPHGVLNSNKQSKPSSYESGPGRPLKAAPPQKPFGDMKPRQTHNSVERRPATSQMDKSRLAAQSSSGARLELAKPKVNDDGLDNNRKLEAAKRRLQERYQEAENAKRQRTIQVMELGDIPKPKHQNRQPMVKSRNNLRNWANGRR
Length534
PositionUnknown
OrganismPanicum hallii var. hallii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum> Panicum sect. Panicum.
Aromaticity0.04
Grand average of hydropathy-1.047
Instability index61.46
Isoelectric point5.29
Molecular weight59140.96
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20304
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.75|      21|      22|     107|     127|       1
---------------------------------------------------------------------------
  107-  127 (37.23/21.26)	HGHG.DEDDDSDSDDERLRRAA
  131-  152 (31.52/16.76)	YGHSyDDDDDEDQEEDEQQHAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     167.71|      33|      34|     371|     403|       2
---------------------------------------------------------------------------
  268-  319 (31.89/13.89)	NSPGSSNPsvvdeedeeglpsppldEGA..F....FATQPTSIQLSE...FfdEM.DE.D....GNL
  320-  357 (19.92/ 6.01)	RHNSDAS........................lgnkRGNNGGRPANYSavaT..QE.PPrH..spGAV
  358-  395 (49.17/25.28)	EKVQFRRP............dlarqEPS..M....RQANPQKPQSSS...L..QV.KP.H....GVL
  396-  432 (40.16/19.34)	NSNKQSKP............ssyesGPGrpL....KAAPPQKPFG........DM.KP.R....QTH
  433-  472 (26.57/10.39)	NSVER.RP............atsqmDKS.......RLA.AQSSSGAR...L..ELaKP.KvnddGLD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20304 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LFTAHRRDAAAPAPASLGSAAASATPATPVEEDKGSVRRVAEKESKVDSSSNGAHGGGHGHGDEDDDSDSDDERLRRAAASNYGHSYDDDDDEDQEEDEQQHAADDAEEEEEDHEAEELEALTNEID
2) NAALADNSPGSSNPSVVDEEDEEGLPSPPLDEGAFFA
3) SEFFDEMDEDGNLRHNSDASLGNKRGNNGGRPANYSAVATQEPPRHSPGAVEKVQFRRPDLARQEPSMRQANPQKPQSSSLQVKPHGVLNSNKQSKPSSYESGPGRPLKAAPPQKPFGDMKPRQTHNSVERRPATSQMDKSRLAAQSSSGARLELAKPKVNDDGLDNNRKLEAAKRRLQERYQEAENAKRQRTIQVMELGDIPKPKHQNRQPMVKSRNNLRNWANGRR
49
262
307
175
298
534










Molecular Recognition Features






MoRF SequenceStartStop




1) DDERLRRAAASNYGHSY
2) LELAKPKV
119
459
135
466