<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20299

Description Uncharacterized protein
SequenceMEIEEATGEMEEMEAPAVSTVAVAISGSRSSRHALKWALDKFVPEGRVLFRILHVRPAITMVPTPMGNFIPISQVREDVASAYRKEAEWQASNMLLPFKKMCAQKKVEAEAVLLESDDVAAAISEEIGKFNISKLVLGSSSKNIFRRKLKGSKTATKISESIPSFCTAYVISKGKLSFVRSATSDVVETPQSISSSTVSSPSSRSLSSCAPSEWGDTYGTANVSFHQPSLPLQRDQALAIINKLSHSHRGAGSGSVASEVSCNEGPGLTSSHSIVSEMQFSSGSSGNSMYKSFHRDNLPDNSDHASVSEISENVHHSNDQDDLRLQIERLRVKLQHLHKLHECAQHESFDTTQELKKLCTQHIEDEIKLKEIQLTEDRVRRLVRKQETEEHEAGKEAEFKQHSYEIEEKHSYNSQANENKTGQKIAGCCFDKYNRYKWEEIQASTSSFSSALMIGKGSYGTVYKAKFHHTIAAVKVLNSPEGCGSQQLQQELEVLGKIRHPHLLMMLGACPEHGCLVYEYMENGSLDDMLQRRNNTPPLTWFDRFRITWEVATALMFLHSSKPEPIIHRDLKPANILLDRNLVSKIGDVGLSTLLPSMGQYLSTMIKNTAPVGTLCYIDPEYQRTGVLSMKSDVYALGIVILQLLTARSPMGLAHVVETALEDGCFIDILDASAGQWPLNETQELAALAIKCSEMRRKDRPDLNEHVLPTLERLKDVATKARESVLQGHTAPPSHFICPILQEVMLDPYVASDGYTYDRKAIELWLSSNGTSPMTNLRLPNKSLIPNHSLRSAIMDWRSKSK
Length802
PositionTail
OrganismPanicum hallii var. hallii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum> Panicum sect. Panicum.
Aromaticity0.06
Grand average of hydropathy-0.380
Instability index49.45
Isoelectric point6.45
Molecular weight89266.47
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20299
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     139.65|      44|      48|     594|     639|       1
---------------------------------------------------------------------------
  594-  639 (72.40/54.09)	LLPSMGQYLSTMIKNTAPVGtlCYIDPEYQRTG..VLSMKSDVYALGI
  645-  690 (67.25/44.08)	LTARSPMGLAHVVETALEDG..CFIDILDASAGqwPLNETQELAALAI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.12|      26|      29|     335|     362|       2
---------------------------------------------------------------------------
  335-  362 (42.39/36.45)	QHLHKLHECAQHEsfDTTQEL..KKLCTQH
  364-  391 (36.73/24.12)	EDEIKLKEIQLTE..DRVRRLvrKQETEEH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.62|      26|      30|     155|     184|       3
---------------------------------------------------------------------------
  120-  153 (30.71/12.77)	AAAISEEIGKFNISKLVlgssSKNifrrKLKGSK
  155-  180 (44.92/32.86)	ATKISESIPSFCTAYVI....SKG....KLSFVR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     126.80|      29|      30|     250|     278|       4
---------------------------------------------------------------------------
  215-  244 (33.11/17.03)	GDTYGT..ANVSFHQ.PSLplqrDQALAIINKL
  250-  278 (48.57/28.19)	GAGSGSVASEVSCNEGPGL....TSSHSIVSEM
  283-  310 (45.12/25.69)	GSSGNSMYKSFHRDNLPD.....NSDHASVSEI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20299 with Med32 domain of Kingdom Viridiplantae
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