<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20290

Description Uncharacterized protein
SequenceMSATPLPPPGQPPPPPGTDGAGGLPPPPGTDMTGICFRDQLWLNSYPLDRNLVFDYFALSPFYDITCNNEALRSRQIHPLDMSQLTKMTGMEYVLSEVMEPHLFVIRKQKRESPEKSSPMLAYYILDGSIYQAPQLCNVFASRISRAMHHISKAFTVACSKLEKIGNVETDSDAAASESKTQKEAIDLKELKRIDHILSSLKRKIGAAPPPPPYPEGYAPPSAEQEKAPDDVLASEAPPQLDPIIDQGPAKRPRFQ
Length256
PositionHead
OrganismPanicum hallii var. hallii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum> Panicum sect. Panicum.
Aromaticity0.07
Grand average of hydropathy-0.485
Instability index73.53
Isoelectric point5.77
Molecular weight28221.94
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20290
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      83.82|      15|     195|      12|      26|       1
---------------------------------------------------------------------------
   12-   26 (32.91/13.09)	PPPPPGTDGAGGLPP
  211-  221 (26.23/ 9.17)	PPPYP..EGYA..PP
  225-  239 (24.68/ 8.26)	QEKAPDDVLASEAPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.24|      20|      30|      28|      49|       2
---------------------------------------------------------------------------
   28-   49 (36.36/31.94)	PGTDMTgiCFRDQLWLNS.YPLD
   61-   81 (34.88/23.24)	PFYDIT..CNNEALRSRQiHPLD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20290 with Med6 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) APPPPPYPEGYAPPSAEQEKAPDDVLASEAPPQLDPIIDQGPAKRPRFQ
2) MSATPLPPPGQPPPPPGTDGAGGLPPPPGT
208
1
256
30










Molecular Recognition Features






MoRF SequenceStartStop




1) KRIDHILSSLKRKIGAA
2) PYPEGYAPPSAEQEKAPDDVLAS
3) QLDPIIDQGPAKRPRF
192
213
240
208
235
255