<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20280

Description Uncharacterized protein
SequenceMDGAANWRPTQGADPAAVAAAGGVDPNAATPAGGDWRTQLQPEARSRIVNKIMETLKKHLPVSVPEGLSELQKIAVRFEEKIYTAATNQSDYLRKISLKMLSMESQTKTQQNPGNAQVIPNQNPTGPAPGLPPQGSNPAQSSAIPLMSQQTRQPNASTSVQGSLPSLGQSLPGVSQTSTLQNMSGMPQNTMNNGLAQGTPQDMYAAQRQMAGRQQQQQQQQQQQAQNQLIYQQQKMLMNQKLQQNSLMQPHIQQQQSLLQSTQMQSSQQAMMQMSSGLQPGQSTISQTQPMAMQSATQSGIQQNPLNSVQQSVQSLLQQPTQSVMRQQQHPQSSMHQQTSLQQTQPTQQSNIPLQQQQPQLMGPQSNLQQNQLISQQNGAGLPVQSNNLLNMQQTQQMLNQQSMPLHQPQQLAPQGNMPNLHHQQQQQQNQQQQLLGTAPNVSSMQRMHMSNKAIQQPQQQHHAQQASMGLMQPQSQQNQLQQSQHHMMSQFQSQPNQLQQQLGMQQRLQTSAGMLLQQNNIDQKQYIQAPRGLQEVSSSTSVDSTAQTGHPGAGDLQEEIYQMIKNLKDQYFAELNDLYNKISMKIQHVDNHMPAHQKSSDQYEKMKNFKALLERTLHFLQLNKSSIQPGFREKIPIYEKQIVNILNSQRRKPVQAPGQQQFQQSVGQAPSSNISQQQQAPGLQQHDSHTNQMPQASLPSMSTGVQSSGAPGIQHVPAPQATNFGVPTTQQNVTNALQPGSNLESAQGNNFNHVQHGSMGAALQQGSTGPMQGAMNAQQQSSSNLLSNNAMSTMQPNTNSMQQNASSLQQLKQQQQEHQIMQSQQIKRQQQMMQHLQQQKQMHQSQLPMQQQLQKQQQQGQMQVPQLHSGNDMNELKVRQGAAMKSGIYQQLGQRNYYQQMKQGGAFPISSPQNLQASSPQISHHSPQVDQHNLLQSQLKTGTPLHSANSPFVPSPSPPVAPSPIPVDSDKPLSNLSSLTSTGQAGHQQTSLPPQTQSIAVNTPGISASPLLAEFTSADGSQANVPTQVPIKSSAAERPLDRLLKALRTTQRQSLTAAVSDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITHDGSGTSKKMKRDTSAMPLNVSLPGSVNDSLKQSYSVETPELQSTATSCVKWQKAEVNHALMEEIQEINQQLIDTELHVSEDDAESFAATSEGAEGTVIRCTFTAVAVSPSLKSMFASAQMSPILPLRLLVPASYPKCSPVLLDKFPDEQSRNSDDLSTKAKSKFGILLRGLAEPMSLREIARTWDACARKVISEYAQQTGGGSFSSSYGCWESCVGA
Length1323
PositionTail
OrganismPanicum hallii var. hallii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum> Panicum sect. Panicum.
Aromaticity0.03
Grand average of hydropathy-0.762
Instability index72.56
Isoelectric point9.18
Molecular weight144842.52
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20280
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|    1120.40|     207|     207|     138|     344|       1
---------------------------------------------------------------------------
  138-  344 (373.34/69.94)	PAQSSAIPLMSQQTR........QPNASTSVQ.GS.LPSLGQSLPGVSQTSTLQ.NMS.GMP..QNTMNNGLAQGTPQDMYAAQRQMAG..RQ...QQQQQQQQQQ....AQNQLIYQQQKMLMNQ.KLQQN............SL..MQPHIQQQQSLLQSTQMQSSQQ.AMMQMS.S..GLQPG...QSTISQTQPMAMQ.SATQSGIQQ.NPLNSVQQSVQSLLQQPTQSVMR.....QQQHPQSSM..........HQQTSL.QQT
  346-  536 (232.73/40.82)	PTQQSNIPLQQQQPQlmgpqsnlQQNQLISQQnGAgLPVQSNNLLNMQQTQQML.NQQ.SMP..LH.........QPQQL.APQGNMPNlhHQ...QQQQQNQQQQllgtAPN..VSSMQRMHMSN.KAIQQpqqqhhaqqasmGL..MQP..QSQQN.....QLQQSQH.HMM....S..QFQ...........SQPNQLQ.Q..QLGMQQ.R....LQTSAGMLLQQN.N..ID.....QKQYIQA..............PRGL.QE.
  539-  693 (186.35/31.21)	..........................SSTSVD..S.TAQTGH..PGAGD...LQeEIY.QMI..KNLKDQYFAE..LNDLY.NKISMKI..QH...VDNHMPAHQK....SSDQ..YE..KM.......K........................NFKALLERT......L.HFLQLNkS..SIQPGfreKIPIYEKQIVNIL.NSQRRKPVQ.AP..GQQQFQQSVGQAPSSNISQ.....QQQAPGLQQ..........HDSHTN.Q..
  694-  839 (200.09/34.06)	......MP....QAS........LPSMSTGVQ.SS.GA......PGIQHVPAPQ.ATNfGVPttQQNVTNALQPGS..NLESAQ..........................GNN..FNHVQHGSMGA.ALQQG............STgpMQGAMNAQQ...QSSSNLLSNN.AMSTM..................QPNTNSMQ.QNA.SSLQQ...LKQQQQEHQ.IMQ..SQQIKR.....QQQ.....M..........MQH..L.QQ.
  840-  997 (127.88/19.10)	...................................................................................QKQMHQ..SQlpmQQQLQKQQQQ....GQMQVPQLHSGNDMNElKVRQG............AA..MKSGIYQQ..LGQRNYYQQMKQgGAFPIS.SpqNLQAS...SPQISHHSPQVDQhNLLQSQLKTgTPLHSANSP...FVPSPSPPVAPspipvDSDKPLSNLssltstgqagHQQTSLpPQT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      66.71|      12|     121|       3|      14|       2
---------------------------------------------------------------------------
    3-   14 (23.41/10.74)	GAANWRPTQGAD
  114-  123 (18.65/ 6.93)	GNAQVIPNQ..N
  126-  137 (24.65/11.74)	GPAPGLPPQGSN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     102.21|      26|      57|    1001|    1026|       3
---------------------------------------------------------------------------
 1001- 1026 (41.91/22.79)	AVNTPG..ISASPLLA.EFTSADGSQANV
 1059- 1086 (35.31/18.12)	AVSDIGsvVSMIDRIA.GSAPGNGSRAAV
 1087- 1109 (24.99/10.79)	GEDLVA..MTKCRLQArNFITHDGS....
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20280 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LNSQRRKPVQAPGQQQFQQSVGQAPSSNISQQQQAPGLQQHDSHTNQMPQASLPSMSTGVQSSGAPGIQHVPAPQATNFGVPTTQQNVTNALQPGSNLESAQGNNFNHVQHGSMGAALQQGSTGPMQGAMNAQQQSSSNLLSNNAMSTMQPNTNSMQQNASSLQQLKQQQQEHQIMQSQQIKRQQQMMQHLQQQKQMHQSQLPMQQQLQKQQQQGQMQVPQLHSGNDMNELKVRQGAAMKSG
2) MDGAANWRPTQGADPAAVAAAGGVDPNAATPAGGDWRTQLQPEARSRIVNKI
3) NQKLQQNSLMQPHIQQQQSLLQSTQMQSSQQAMMQMSSGLQPGQSTISQTQPMAMQSATQSGIQQNPLNSVQQSVQSLLQQPTQSVMRQQQHPQSSMHQQTSLQQTQPTQQSNIPLQQQQPQLMGPQSNLQQNQLISQQNGAGLPVQSNNLLNMQQTQQMLNQQSMPLHQPQQLAPQGNMPNLHHQQQQQQNQQQQLLGTAPNVSSMQRMHMSNKAIQQPQQQHHAQQASMGLMQPQSQQNQLQQSQHHMMSQFQSQPNQLQQQLGMQQRLQTSAGML
4) PLLAEFTSADGSQANVPTQVPIKSSAAERPLDRLLKALRT
5) QQMKQGGAFPISSPQNLQASSPQISHHSPQVDQHNLLQSQLKTGTPLHSANSPFVPSPSPPVAPSPIPVDSDKPLSNLSSLTSTGQAGHQQTSLPPQTQSIAVNTP
6) RKISLKMLSMESQTKTQQNPGNAQVIPNQNPTGPAPGLPPQGSNPAQSSAIPLMSQQTRQPNASTSVQGSLPSLGQSLPGVSQTSTLQNMSGMPQNTMNNGLAQGTPQDMYAAQRQMAGRQQQQQQQQQQQAQNQLIYQQQK
7) YIQAPRGLQEVSSSTSVDSTAQTGHPGAGDLQEE
647
1
239
1011
900
94
527
888
52
516
1050
1005
235
560










Molecular Recognition Features






MoRF SequenceStartStop




NANANA