<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20279

Description Uncharacterized protein
SequenceMDGAANWRPTQGADPAAVAAAGGVDPNAATPAGGDWRTQLQPEARSRIVNKIMETLKKHLPVSVPEGLSELQKIAVRFEEKIYTAATNQSDYLRKISLKMLSMESQTKTQQNPGNAQVIPNQNPTAPGLPPQGSNPAQSSAIPLMSQQTRQPNASTSVQGSLPSLGQSLPGVSQTSTLQNMSGMPQNTMNNGLAQGTPQDMYAAQRQMAGRQQQQQQQQQQQAQNQLIYQQQKMLMNQKLQQNSLMQPHIQQQQSLLQSTQMQSSQQAMMQMSSGLQPGQSTISQTQPMAMQSATQSGIQQNPLNSVQQSVQSLLQQPTQSVMRQQQHPQSSMHQQTSLQQTQPTQQSNIPLQQQQPQLMGPQSNLQQNQLISQQNGAGLPVQSNNLLNMQQTQQMLNQQSMPLHQPQQLAPQGNMPNLHHQQQQQQNQQQQLLGTAPNVSSMQRMHMSNKAIQQPQQQHHAQQASMGLMQPQSQQNQLQQSQHHMMSQFQSQPNQLQQQLGMQQRLQTSAGMLLQQNNIDQKQYIQAPRGLQEVSSSTSVDSTAQTGHPGAGDLQEEIYQMIKNLKDQYFAELNDLYNKISMKIQHVDNHMPAHQKSSDQYEKMKNFKALLERTLHFLQLNKSSIQPGFREKIPIYEKQIVNILNSQRRKPVQAPGQQQFQQSVGQAPSSNISQQQQAPGLQQHDSHTNQMPQASLPSMSTGVQSSGAPGIQHVPAPQATNFGVPTTQQNVTNALQPGSNLESAQGNNFNHVQHGSMGAALQQGSTGPMQGAMNAQQQSSSNLLSNNAMSTMQPNTNSMQQNASSLQQLKQQQQEHQIMQSQQIKRQQQMMQHLQQQKQMHQSQLPMQQQLQKQQQQGQMQVPQLHSGNDMNELKVRQGAAMKSGIYQQLGQRNYYQQMKQGGAFPISSPQNLQASSPQISHHSPQVDQHNLLQSQLKTGTPLHSANSPFVPSPSPPVAPSPIPVDSDKPLSNLSSLTSTGQAGHQQTSLPPQTQSIAVNTPGISASPLLAEFTSADGSQANVPTQVPIKSSAAERPLDRLLKALRTTQRQSLTAAVSDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITHDGSGTSKKMKRDTSAMPLNVSLPGSVNDSLKQSYSVETPELQSTATSCVKWQKAEVNHALMEEIQEINQQLIDTELHVSEDDAESFAATSEGAEGTVIRCTFTAVAVSPSLKSMFASAQMSPILPLRLLVPASYPKCSPVLLDKFPDEQSRNSDDLSTKAKSKFGILLRGLAEPMSLREIARTWDACARKVISEYAQQTGGGSFSSSYGCWESCVGA
Length1321
PositionTail
OrganismPanicum hallii var. hallii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum> Panicum sect. Panicum.
Aromaticity0.03
Grand average of hydropathy-0.762
Instability index72.58
Isoelectric point9.18
Molecular weight144688.35
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20279
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|     891.90|     106|     107|     275|     380|       2
---------------------------------------------------------------------------
  164-  270 (117.35/24.75)	SLGqslPGVSQTS.....TL.QNM...S.....GMPQNTMNNglAQG...T.PQDMYAAQRQMAGRQQ....QQQQ.............................QQQQQA.QN........................QLIYQ.QQK..ML.M......NQklQ.Q......NS..LM......QPhiqqqQ..SLL...QSTQMQSSQQ.A.MM
  275-  380 (198.74/48.37)	GLQ...PGQSTIS.....QT.QPMAMQS.ATQSGIQQNPLNS..VQQ...S.VQSLLQQPTQSVMRQQ....QHPQSS........................M..HQQTSL.QQ........................TQPTQ.QSN..IP.L......QQ..Q.Q......PQ..LM......GP.....Q..SNL...QQNQLISQQNGA.GL
  383-  433 (63.36/ 9.08)	...................................QSNNLLN..MQQ.............TQQMLNQQ....SMP...........................L..HQP....QQ........................LAP...QGN..MPnL......HH..Q.Q......QQ.................Q..QN..........QQQQ....L
  435-  531 (118.57/25.10)	GTA...PN...VS.....SM.QRMHMSNkAIQQPQQQ...HH..AQQ...A.SMGLM.QP.QS...QQ....NQLQQS........................Q..HHMMSQ.FQ........................SQPNQlQQQ..LG.M......QQ..RlQ......TSagML......LQ.....Q..NNI...DQKQYIQAPRG....
  532-  665 (79.20/13.68)	.LQ...EVSSSTSvdstaQTgHPGA..G.DLQEEIYQMIKNL..KDQyfaE.LNDLYNKISMKI........QHVDNH........................MpaHQKSS..DQyekmknfkallertlhflqlnkssIQPGF.REK..IP.I......YE..K.QivnilnSQ..RR......KP.....V..QAP...GQQQF..QQ....SV
  666-  760 (103.11/20.61)	GQA...PS.SNIS.....QQ.Q........QAPGLQQHDSHT..NQM...P.QASL...PSMS.........TGVQSS............................GAPGI.QH........................VPAPQ.ATNfgVP.T......TQ..Q.N.....vTN..AL......QP.....G..SNLesaQGNNFNHVQHGSmGA
  761-  881 (91.60/17.28)	ALQ...QG..........ST.GPM............QGAMNA..QQQ...S.SSNLLSNNAMSTMQPNtnsmQQNASSlqqlkqqqqehqimqsqqikrqqqM..MQH..L.QQ........................QKQMH.QSQ..LP.MqqqlqkQQ..Q.Q......GQ..MQ......VP.....QlhSGN...DMNELKVRQ.GA...
  882-  938 (61.99/ 8.68)	.............................AMKSGIYQQ.LG....Q.......RNYYQQMKQGGAFPI....SSPQN.................................L.QA........................SSP.........Q.I......SH..H.S......PQ..V........D.....Q..HNL...LQSQL..........
  939- 1023 (57.97/ 7.51)	.........KT...........GTPLHS.A.NSPFVPSPSPP..VAP...SpIPVDSDKPLSNLSSLT....STGQAG...........................HQQTSLpPQ........................TQ.SI.AVN..TP.G......IS..A.S......PL..LAeftsadGS.....Q..AN...................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.30|      26|     108|       3|      44|       3
---------------------------------------------------------------------------
    9-   34 (47.52/46.62)	PTQGADPAAVAA.....AGGVDPNAATPAGG
  130-  160 (42.78/10.44)	PPQGSNPAQSSAiplmsQQTRQPNASTSVQG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20279 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LNSQRRKPVQAPGQQQFQQSVGQAPSSNISQQQQAPGLQQHDSHTNQMPQASLPSMSTGVQSSGAPGIQHVPAPQATNFGVPTTQQNVTNALQPGSNLESAQGNNFNHVQHGSMGAALQQGSTGPMQGAMNAQQQSSSNLLSNNAMSTMQPNTNSMQQNASSLQQLKQQQQEHQIMQSQQIKRQQQMMQHLQQQKQMHQSQLPMQQQLQKQQQQGQMQVPQLHSGNDMNELKVRQGAAMKSG
2) MDGAANWRPTQGADPAAVAAAGGVDPNAATPAGGDWRTQLQPEARSRIVNKI
3) NQKLQQNSLMQPHIQQQQSLLQSTQMQSSQQAMMQMSSGLQPGQSTISQTQPMAMQSATQSGIQQNPLNSVQQSVQSLLQQPTQSVMRQQQHPQSSMHQQTSLQQTQPTQQSNIPLQQQQPQLMGPQSNLQQNQLISQQNGAGLPVQSNNLLNMQQTQQMLNQQSMPLHQPQQLAPQGNMPNLHHQQQQQQNQQQQLLGTAPNVSSMQRMHMSNKAIQQPQQQHHAQQASMGLMQPQSQQNQLQQSQHHMMSQFQSQPNQLQQQLGMQQRLQTSAGML
4) PLLAEFTSADGSQANVPTQVPIKSSAAERPLDRLLKALRT
5) QQMKQGGAFPISSPQNLQASSPQISHHSPQVDQHNLLQSQLKTGTPLHSANSPFVPSPSPPVAPSPIPVDSDKPLSNLSSLTSTGQAGHQQTSLPPQTQSIAVNTP
6) RKISLKMLSMESQTKTQQNPGNAQVIPNQNPTAPGLPPQGSNPAQSSAIPLMSQQTRQPNASTSVQGSLPSLGQSLPGVSQTSTLQNMSGMPQNTMNNGLAQGTPQDMYAAQRQMAGRQQQQQQQQQQQAQNQLIYQQQK
7) YIQAPRGLQEVSSSTSVDSTAQTGHPGAGDLQEE
645
1
237
1009
898
94
525
886
52
514
1048
1003
233
558










Molecular Recognition Features






MoRF SequenceStartStop




1) MDGAANWR
1
8