<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20277

Description Uncharacterized protein
SequenceMDGAANWRPTQGADPAAVAAAGGVDPNAATPAGGDWRTQLQPEARSRIVNKIMETLKKHLPVSVPEGLSELQKIAVRFEEKIYTAATNQSDYLRKISLKMLSMESQTKTQQNPGNAQVIPNQNPTAPGLPPQGSNPAQSSAIPLMSQQTRQPNASTSVQGSLPSLGQSLPGVSQTSTLQNMSGMPQNTMNNGLAQGTPQDMYAAQRQMAGRQQQQQQQQQQQAQNQLIYQQQKMLMNQKLQQNSLMQPHIQQQQSLLQSTQMQSSQQAMMQMSSGLQPGQSTISQTQPMAMQSATQSGIQQNPLNSVQQSVQSLLQQPTQSVMRQQQHPQSSMHQQTSLQQTQPTQQSNIPLQQQQPQLMGPQSNLQQNQLISQQNGAGLPVQSNNLLNMQQTQQMLNQQSMPLHQPQQLAPQGNMPNLHHQQQQQQNQQQQLLGTAPNVSSMQRMHMSNKAIQQPQQQHHAQQASMGLMQPQSQQNQLQQSQHHMMSQFQSQPNQLQQQLGMQQRLQTSAGMLLQQNNIDQKQYIQAPRGLQEVSSSTSVDSTAQTGHPGAGDLQEEIYQMIKNLKDQYFAELNDLYNKISMKIQHVDNHMPAHQKSSDQYEKMKNFKALLERTLHFLQLNKSSIQPGFREKIPIYEKQIVNILNSQRRKPVQAPGQQQFQQSVGQAPSSNISQQQQAPGLQQHDSHTNQMPQASLPSMSTGVQSSGAPGIQHVPAPQATNFGVPTTQQNVTNALQPGSNLESAQGNNFNHVQHGSMGAALQQGSTGPMQGAMNAQQQSSSNLLSNNAMSTMQPNTNSMQQNASSLQQLKQQQQEHQIMQSQQIKRQQQMMQHLQQQKQMHQSQLPMQQQLQKQQQQGQMQVPQLHSGNDMNELKVRQGAAMKSGIYQQLGQRNYYQQMKQGGAFPISSPQNLQASSPQISHHSPQVDQHNLLQSQLKTGTPLHSANSPFVPSPSPPVAPSPIPVDSDKPLSNLSSLTSTGQAGHQQTSLPPQTQSIAVNTPGISASPLLAEFTSADGSQANVPTQVPIKSSAAERPLDRLLKALRTTQRQSLTAAVSDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITHDGSGTSKKMKRDTSAMPLNVSLPGSVNDSLKQSYSVETPELQSTATSCVKWQKAEVNHALMEEIQEINQQLIDTELHVSEDDAESFAATSEGAEGTVIRCTFTAVAVSPSLKSMFASAQMSPILPLRLLVPASYPKCSPVLLDKFPDEQRNSDDLSTKAKSKFGILLRGLAEPMSLREIARTWDACARKVISEYAQQTGGGSFSSSYGCWESCVGA
Length1320
PositionTail
OrganismPanicum hallii var. hallii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum> Panicum sect. Panicum.
Aromaticity0.03
Grand average of hydropathy-0.762
Instability index72.15
Isoelectric point9.18
Molecular weight144601.28
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20277
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.84|      24|      25|     807|     830|       1
---------------------------------------------------------------------------
  210-  233 (32.88/ 6.46)	GRQQQQQQQQQQQAQNQLIYQQQK
  807-  830 (36.96/ 8.55)	LQQLKQQQQEHQIMQSQQIKRQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
            10|     937.52|     106|     107|     275|     380|       2
---------------------------------------------------------------------------
    8-  129 (80.07/13.06)	..RPTQG.........A.DPAAVAA.A..GGVDPNAATPAGG...D.WRTQLQP.EARSRIVnkimetlKK....HLPVSV........................P..EGLS...EL.QK..............iavrfeekiyTAATN.Q...................................SD..Y..L......RKI.S......LK..MlsM......ES.....Q..TKT...QQNpgnaQVIPNQNptAP.GL
  133-  270 (100.24/18.48)	GSNPAQSS...........AIPLMS...QQTRQPNASTSVQG...S.LPSLGQSlPGVSQTS.......TL....QN.MSG........................M..PQNTmnnGL.AQ........................GTP.Q.DmyaaqrqmagrqqqqqqqqqqqaqnqliyqqqkmlMN..QK.L......Q...Q......NS..L..M......QPhiqqqQ..SLL...QST....QMQSSQQ...A.MM
  275-  380 (198.28/44.81)	GLQPGQSTIS.....QT.QPMAMQS.ATQSGIQQNPLNSVQQ...S.VQSLLQQ.PTQSVMR.......QQ....QHPQSS........................M..HQQT...SL.QQ........................TQPTQ.Q...................................SN..IP.L......QQQ.Q......PQ..L..M......GP.....Q..SNL...QQN....QLISQQN..GA.GL
  383-  433 (60.95/ 7.93)	................................QSNNLLNMQQ..............TQQMLN.......QQ....SMP...........................L..HQP.......QQ........................LAP...Q...................................GN..MPnL......HHQ.Q......QQ...................Q..QN..............QQQQ......L
  435-  531 (113.92/22.15)	GTAPN...VS.....SM.QRMHMSNkAIQQPQQQ...HHAQQ...A.SMGLM.Q.P.QS..........QQ....NQLQQS........................Q..HHMM...SQ.FQ........................SQPNQlQ...................................QQ..LG.M......QQRlQ......TSagM..L......LQ.....Q..NNI...DQK....QYIQAPR..G....
  532-  665 (72.39/11.00)	.LQEVSSSTSvdstaQTgHPGA..G.DLQEEIYQMIKNLKDQyfaE.LNDLYNK.ISMKI...............QHVDNH........................MpaHQKS...S..DQyekmknfkallertlhflqlnkssIQPGF.R...................................EK..IP.I......YEK.QivnilnSQ..R..R......KP.....V..QAP...GQQ....QF..QQ......SV
  666-  760 (103.44/19.34)	GQAPS.SNIS.....QQ.Q........QAPGLQQHDSHTNQM...P.QASL....PSMS................TGVQSS............................GAP...GI.QH........................VPAPQ.A...................................TNfgVP.T......TQQ.N.....vTN..A..L......QP.....G..SNLesaQGN....NFNHVQH..GSmGA
  761-  881 (88.40/15.30)	ALQQG..........ST.GPM............QGAMNAQQQ...S.SSNLLSN.NAMSTMQ.......PNtnsmQQNASSlqqlkqqqqehqimqsqqikrqqqM..MQH.....L.QQ........................QKQMH.Q...................................SQ..LP.MqqqlqkQQQ.Q......GQ..M..Q......VP.....QlhSGN...DMN....ELKVRQ...GA...
  882-  938 (59.86/ 7.63)	..........................AMKSGIYQQ.LG..Q.......RNYYQQ.MKQGGAF.......PI....SSPQN....................................L.QA........................SSP............................................Q.I......SHH.S......PQ..V..........D.....Q..HNL...LQS....QL............
  939- 1023 (59.97/ 7.66)	......KT...........GTPLHS.A.NSPFVPSPSPPVAP...SpIPVDSDK.PLSNLSS.......LT....STGQAG...........................HQQT...SLpPQ........................TQ.SI.A...................................VN..TP.G......ISA.S......PL..L..AeftsadGS.....Q..AN.........................
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20277 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LNSQRRKPVQAPGQQQFQQSVGQAPSSNISQQQQAPGLQQHDSHTNQMPQASLPSMSTGVQSSGAPGIQHVPAPQATNFGVPTTQQNVTNALQPGSNLESAQGNNFNHVQHGSMGAALQQGSTGPMQGAMNAQQQSSSNLLSNNAMSTMQPNTNSMQQNASSLQQLKQQQQEHQIMQSQQIKRQQQMMQHLQQQKQMHQSQLPMQQQLQKQQQQGQMQVPQLHSGNDMNELKVRQGAAMKSG
2) MDGAANWRPTQGADPAAVAAAGGVDPNAATPAGGDWRTQLQPEARSRIVNKI
3) NQKLQQNSLMQPHIQQQQSLLQSTQMQSSQQAMMQMSSGLQPGQSTISQTQPMAMQSATQSGIQQNPLNSVQQSVQSLLQQPTQSVMRQQQHPQSSMHQQTSLQQTQPTQQSNIPLQQQQPQLMGPQSNLQQNQLISQQNGAGLPVQSNNLLNMQQTQQMLNQQSMPLHQPQQLAPQGNMPNLHHQQQQQQNQQQQLLGTAPNVSSMQRMHMSNKAIQQPQQQHHAQQASMGLMQPQSQQNQLQQSQHHMMSQFQSQPNQLQQQLGMQQRLQTSAGML
4) PLLAEFTSADGSQANVPTQVPIKSSAAERPLDRLLKALRT
5) QQMKQGGAFPISSPQNLQASSPQISHHSPQVDQHNLLQSQLKTGTPLHSANSPFVPSPSPPVAPSPIPVDSDKPLSNLSSLTSTGQAGHQQTSLPPQTQSIAVNTP
6) RKISLKMLSMESQTKTQQNPGNAQVIPNQNPTAPGLPPQGSNPAQSSAIPLMSQQTRQPNASTSVQGSLPSLGQSLPGVSQTSTLQNMSGMPQNTMNNGLAQGTPQDMYAAQRQMAGRQQQQQQQQQQQAQNQLIYQQQK
7) YIQAPRGLQEVSSSTSVDSTAQTGHPGAGDLQEE
645
1
237
1009
898
94
525
886
52
514
1048
1003
233
558










Molecular Recognition Features






MoRF SequenceStartStop




1) MDGAANWR
1
8