<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20272

Description Uncharacterized protein
SequenceMPRSGRLLLQSSKNILLPSVLLESEEALNKGSLTPNEVFVNLRIKSILHLFAATGRFLGLKVFSQSQVTLKIPKSVLYGSDFMVMGFPQCTNAYYFLIQLDNNLRPVFHLLETQSDESNSSNADANQVIRFNRIDISCIQTGEDEYSVNLFDTGKALQGIEGGSLRPSGNEKLVPLTPSLSSSFSSLVDEVFEHSTSSSTIENQHFPPSSLPSTHVSSFQVGPEGLCGTACLPELRNSIHSDINTSEVTHDVSLNSDLLSSSSGPARISPMPSDCKSGHGLSSLSSLRGHDISRGGKSLQLVSSDGQRVLGNISTTKLGGPSRKRSLSEIVLNIPSLQQSRISDGPRKRRKASEIMKDSALSKEYSSGKPLTYGNIFTEENRCVTSAIYASVLCHAIKHCSLCIKYAQLTTQMDSLGIPYAEEAELGTPSSNLWLRLPFLKEDSWKHVCLRLGKTGHMSWDVRITDPYYGSLWKVYGGSTTTEWGIGVRIANTSEIDSHITFDDDGVVLTYHTVEAASVHRLVSDLRRLSNTRAFSCGMRRLIGIKVDDKRDEKVTSAETNLHPTTKGSKHRLSEQIRKIFRIEAVGLMSLWFSYVSAPKVHFVVEWEAGNDRCAIHVSPDQLWPHTKFLEDFVNVGEVASFLDSIRLTAGPLLALSIAIRPAKMPVTTTGYSSVPKQNNFRAQGQPANDSSSTTMQNVCAPLSPSGAHPNYHNLQSSMLSATGRGGPGLVPSPSLPFDVTVVLRGPYWIRVIYRKIISVDIRCFSGDQVWLQPATPPKGGPSVGGSLPCPQFRPFIMEHVAQGLNAFEPSYMSARHSGAQLKANANTASGSQQSAPALNRFHGAHGVAISRPTPNVGNQVAPSFTRAGSAMVASSKFASGIAGHPSHLSPGTNLPVHMKGELSSAFTGLGDDGGYGGAWVPLAALKKVLRVILKYLGVLWLFSQFPELLKEILGSVLKENEGALLNLDQEQPALRFFVGGYVFAVSVQRAQLLLQVLNVKRFHHQQQKQQQQAQSPAQEELAISEINEICDYFSRRVACEPYDASRVASFITLLTLPISVLREFISLIAWKKSQSRAHGDIASAQRVRVELCLEKHHVSDSSDHAESSSSSRSNIKHDRANRSVDFGLTFVLDHGLKHHTNIGGAAWLPYCVSVRLRYNFGDNGHVMFLAMEGSHGGKACWLQYEDWERCKQAVVRAMESANGSPAPGETGQGRLRLVAEMIHKQLQLSLQQLRNGPLSAS
Length1242
PositionTail
OrganismPanicum hallii var. hallii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum> Panicum sect. Panicum.
Aromaticity0.07
Grand average of hydropathy-0.218
Instability index53.06
Isoelectric point8.81
Molecular weight135737.51
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20272
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.41|      21|      23|     828|     849|       1
---------------------------------------------------------------------------
  828-  849 (32.96/23.52)	TASGSQQSAPALNRfHGAHGVA
  854-  874 (37.45/21.74)	TPNVGNQVAPSFTR.AGSAMVA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     167.69|      55|     155|     162|     229|       2
---------------------------------------------------------------------------
   31-   90 (89.02/45.49)	GSLTP..NEVFVNLrIKSILHLFAAtgrfLGLKVF..SQSQVTLK...IPKSVL...YGSDFMVMGFPQC
  163-  227 (78.67/67.29)	GSLRPsgNEKLVPL.TPSLSSSFSS....LVDEVFehSTSSSTIEnqhFPPSSLpstHVSSFQVGPEGLC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.84|      19|     155|     717|     737|       4
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  254-  273 (30.97/12.49)	LNSDLLSSS..SGPARIsPMPS
  715-  735 (30.87/17.95)	LQSSMLSATgrGGPGLV.PSPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     197.94|      57|     118|     646|     703|       6
---------------------------------------------------------------------------
  646-  703 (95.56/47.86)	IRLTAGPLLALSIAIRPAKMPvTTTGYSSVPKQNNF....RAQGQPANDSSSTTMQNVCAPL
  762-  822 (102.37/48.35)	IRCFSGDQVWLQPATPPKGGP.SVGGSLPCPQFRPFimehVAQGLNAFEPSYMSARHSGAQL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.50|      17|     118|     463|     487|       9
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  445-  466 (24.34/20.31)	WKhvclRLGKTGHMSW..DvRITD
  473-  492 (24.16/12.25)	WK....VYGGSTTTEWgiGvRIAN
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20272 with Med14 domain of Kingdom Viridiplantae
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